View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18323_high_12 (Length: 442)
Name: NF18323_high_12
Description: NF18323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18323_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 424
Target Start/End: Complemental strand, 5286513 - 5286090
Alignment:
| Q |
1 |
aactaaggagggatgttgagtaactccacaagagggtcagatagccatctatctgtccaaaaatgcaccttttgtctagttacaatttgcaaataggaac |
100 |
Q |
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| T |
5286513 |
aactaaggagggatgttgagtaactccacaagagggtcagatagccatctatctgtccaaaaatgtaccttttgtctagttacaatttgcaaataggaac |
5286414 |
T |
|
| Q |
101 |
agccaaatatatgaatggaagattacctatgccaaatatattctgaagattttcaaatgcacaacatgttagctttggtccctttatagaaaatgaacac |
200 |
Q |
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| T |
5286413 |
agccaaatatatgaatggaagattacctatgccaaatatattctgaagattttcaaatgcacaacatgttagctttggtccctttatagaaaatgaacac |
5286314 |
T |
|
| Q |
201 |
atcatttgtagcataaaaataattacttgggagtgtcattctttttgtaacatgcataggagtaggtgcaccagttgtc-nnnnnnnnnnnnnnncctgc |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
5286313 |
atcatttgtagcataaaaataattacttgggagtgtcattctttttgtaacatgcataggagtaggtgcaccagttgtcacaaatataaaaaaaacctgc |
5286214 |
T |
|
| Q |
300 |
cactatataccaagtctttcagccagaatttttgtcacagttttgaattgaaagtttgccaaagtaagggggctttgaaagtctgcatatatgagttgaa |
399 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
5286213 |
cactatataccaagtctttcagccagaatttttgtcgcagttttgaattgaaagtttgccaaagtaa-ggggctttgaaagtctgcatatatgagttgaa |
5286115 |
T |
|
| Q |
400 |
gagacagatttgcaaaagtagttct |
424 |
Q |
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| T |
5286114 |
gagacagatttgcaaaagtagttct |
5286090 |
T |
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