View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18323_high_17 (Length: 342)

Name: NF18323_high_17
Description: NF18323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18323_high_17
NF18323_high_17
[»] scaffold0016 (2 HSPs)
scaffold0016 (105-180)||(59462-59537)
scaffold0016 (1-37)||(59605-59641)
[»] chr1 (2 HSPs)
chr1 (105-170)||(40173663-40173728)
chr1 (105-145)||(33212767-33212807)
[»] scaffold0189 (1 HSPs)
scaffold0189 (106-163)||(26234-26291)
[»] chr2 (3 HSPs)
chr2 (106-172)||(40068390-40068462)
chr2 (1-37)||(24845899-24845935)
chr2 (1-37)||(38260848-38260884)
[»] scaffold0181 (1 HSPs)
scaffold0181 (105-170)||(3207-3273)
[»] chr4 (2 HSPs)
chr4 (105-170)||(52476329-52476401)
chr4 (105-145)||(17558663-17558703)
[»] chr6 (1 HSPs)
chr6 (139-171)||(18367796-18367828)


Alignment Details
Target: scaffold0016 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 105 - 180
Target Start/End: Complemental strand, 59537 - 59462
Alignment:
Q  105 gccgtgtccgtgtcctacgttttttcagattagccgtgtccatgtcgtgtcccgtgtccgtgtccgtgcatcatag 180  Q
    ||||||||||||||||||||||||| ||||||||||||||| |||||| ||| | |||||||||||||||||||||    
T  59537 gccgtgtccgtgtcctacgtttttttagattagccgtgtccgtgtcgtatcctgcgtccgtgtccgtgcatcatag 59462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 59641 - 59605
Alignment:
Q  1 ttgattgaaagtttaaataaacatgaattatgcctct 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  59641 ttgattgaaagtttaaataaacatgaattatgcctct 59605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 6e-22; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 105 - 170
Target Start/End: Complemental strand, 40173728 - 40173663
Alignment:
Q  105 gccgtgtccgtgtcctacgttttttcagattagccgtgtccatgtcgtgtcccgtgtccgtgtccg 170  Q
    ||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  40173728 gccgtgtccgtgtcctaggtttttttagattagccgtgtccgtgtcgtgtcccgtgtccgtgtccg 40173663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 105 - 145
Target Start/End: Original strand, 33212767 - 33212807
Alignment:
Q  105 gccgtgtccgtgtcctacgttttttcagattagccgtgtcc 145  Q
    ||||||||||||||||||||||||| |||||||||||||||    
T  33212767 gccgtgtccgtgtcctacgtttttttagattagccgtgtcc 33212807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 106 - 163
Target Start/End: Complemental strand, 26291 - 26234
Alignment:
Q  106 ccgtgtccgtgtcctacgttttttcagattagccgtgtccatgtcgtgtcccgtgtcc 163  Q
    |||||||||||||||| ||||||| ||||||||||||||| ||  |||||||||||||    
T  26291 ccgtgtccgtgtcctaggtttttttagattagccgtgtccgtgctgtgtcccgtgtcc 26234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 106 - 172
Target Start/End: Original strand, 40068390 - 40068462
Alignment:
Q  106 ccgtgtccgtgtcctacgttttttcagattagccgtgtccatgtc------gtgtcccgtgtccgtgtccgtg 172  Q
    ||||||| |||||||| ||||||| ||||||||||||||| ||||      ||||||||||||||||||||||    
T  40068390 ccgtgtcggtgtcctaggtttttttagattagccgtgtccgtgtccgtgtcgtgtcccgtgtccgtgtccgtg 40068462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 24845899 - 24845935
Alignment:
Q  1 ttgattgaaagtttaaataaacatgaattatgcctct 37  Q
    |||||||||||||||||||||||||||||||| ||||    
T  24845899 ttgattgaaagtttaaataaacatgaattatgtctct 24845935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 38260884 - 38260848
Alignment:
Q  1 ttgattgaaagtttaaataaacatgaattatgcctct 37  Q
    ||||||||||||||||||||||||||||| |||||||    
T  38260884 ttgattgaaagtttaaataaacatgaattgtgcctct 38260848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0181 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0181
Description:

Target: scaffold0181; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 170
Target Start/End: Original strand, 3207 - 3273
Alignment:
Q  105 gccgtgtccgtgtcctacgttttttc-agattagccgtgtccatgtcgtgtcccgtgtccgtgtccg 170  Q
    |||||||| |||||||| |||||||  |||||||| |||||| | ||||||||||| ||||||||||    
T  3207 gccgtgtcggtgtcctaggttttttttagattagctgtgtccgtttcgtgtcccgtctccgtgtccg 3273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 170
Target Start/End: Complemental strand, 52476401 - 52476329
Alignment:
Q  105 gccgtgtccgtgtcctacgttttttcagattagccgtgtcca-------tgtcgtgtcccgtgtccgtgtccg 170  Q
    |||||||| |||||||| ||||||| |||||||||||||||        ||||||||||||||||||||||||    
T  52476401 gccgtgtcggtgtcctaagtttttttagattagccgtgtcccgtgtccgtgtcgtgtcccgtgtccgtgtccg 52476329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 105 - 145
Target Start/End: Complemental strand, 17558703 - 17558663
Alignment:
Q  105 gccgtgtccgtgtcctacgttttttcagattagccgtgtcc 145  Q
    |||||||| |||||||| ||||||| |||||||||||||||    
T  17558703 gccgtgtcggtgtcctaagtttttttagattagccgtgtcc 17558663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 139 - 171
Target Start/End: Complemental strand, 18367828 - 18367796
Alignment:
Q  139 cgtgtccatgtcgtgtcccgtgtccgtgtccgt 171  Q
    |||||||||||||||||| ||||||||||||||    
T  18367828 cgtgtccatgtcgtgtccggtgtccgtgtccgt 18367796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University