View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18323_high_19 (Length: 306)
Name: NF18323_high_19
Description: NF18323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18323_high_19 |
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Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 17 - 290
Target Start/End: Complemental strand, 36530775 - 36530503
Alignment:
| Q |
17 |
cgtacaccaaactagacgatacaaacaccggtaataatttaagacaatggaaatacttgaatgcaatcatatgtacaaatgtcgtgtcaatcatctatag |
116 |
Q |
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| T |
36530775 |
cgtacaccgaactagacgatacaaacacaagtaataatttaagacaatggaaatacttgaatgcaatcacatgtacaaatgtcgtgtcaatcctcta--g |
36530678 |
T |
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| Q |
117 |
tcagtattcactactatatcatgtattactagcataaaagataacacgaacacgg-tgctgtagacatgattcattcacacgcaagaaaatgccgcaaca |
215 |
Q |
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| T |
36530677 |
tcaatattcactactatatcatgtattactagcataaaagataacacgaacacgggtgctgtagacatgattcattcacacacaagaaaatgccgcaaca |
36530578 |
T |
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| Q |
216 |
caacaaataaattagttctaaggtggcaaaatggattaatttgatagatttgcattggattgttaatgaatggat |
290 |
Q |
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| T |
36530577 |
caacaaataaattagttctaaggtggcaaaatggatgaatttgatagatttgcattggattgttaatgaatggat |
36530503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 177 - 251
Target Start/End: Complemental strand, 36530304 - 36530230
Alignment:
| Q |
177 |
tagacatgattcattcacacgcaagaaaatgccgcaacacaacaaataaattagttctaaggtggcaaaatggat |
251 |
Q |
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| T |
36530304 |
tagacatgattcattcacacacgagaaaatgccgcaacataacaatcaaattagttctagggtggaaaaatggat |
36530230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 110 - 162
Target Start/End: Complemental strand, 21417834 - 21417782
Alignment:
| Q |
110 |
tctatagtcagtattcactactatatcatgtattactagcataaaagataaca |
162 |
Q |
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| T |
21417834 |
tctatggtcagtattcactactatatcatgtattactagcataatagataaca |
21417782 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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