View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18323_high_2 (Length: 656)
Name: NF18323_high_2
Description: NF18323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18323_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 506; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 14 - 647
Target Start/End: Original strand, 4663678 - 4664300
Alignment:
| Q |
14 |
aggtatgtagttctatatacgtggctaaacgatattgctaagaatcacaatcaaatgtggttgatgcgacctcatttgaggttgtgttttaatcaaagag |
113 |
Q |
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| T |
4663678 |
aggtatgtagttctatatacgtgactaaacgatattgctaagaatcacaatcaaatgtggttgatgcgacctcatttgaggttgtgttttaatcaaagag |
4663777 |
T |
|
| Q |
114 |
aaatagaaaatctcgatattgaagtttagattgtagcagtagaccttattttaatacctattatctatgtattgacaattatatagtgttaataagtttc |
213 |
Q |
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| T |
4663778 |
aaatagaaaatctcgatattgaagtttagattgtagcaatagaccttattttattg----------aagt-ttgacaattata--gtgttaataattttc |
4663864 |
T |
|
| Q |
214 |
aataatggtgaattttggttgcagctgaggcatacggattaccatatttgcaaccatatctgaaagtaatcaaaagcaatcaaatcatccgcaatggagt |
313 |
Q |
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| T |
4663865 |
aataatggtgaattttggttgcagctgaggcatacggattaccatatttgcaaccatatctgaaagtaatcaaaagcaatcaaatcatccgcaatggagt |
4663964 |
T |
|
| Q |
314 |
aaattttgcagtcgctggagccacagcgcttgatgtagaattcttcaacaaagaaatgggaaaattgctatggacaaatcattcattgaacattcagctt |
413 |
Q |
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| T |
4663965 |
aaattttgcagtcgctggagccacagcgcttggtgtagaattcttcaacaaagaaatgggaaaattgctatggacaaatcattcattgaacattcagctt |
4664064 |
T |
|
| Q |
414 |
ggctggtttaagaagctgaaaccttccttttgtacaactaaacaaggtaacatataacattcattgaccatcccaaatgaaactattgtatgaaattttc |
513 |
Q |
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| T |
4664065 |
ggctggttcaagaagctgaagccttccttttgtacaactaaacaaggtaacatataacattcattgaccatcccaaatgaaaccattgtatgaaattttc |
4664164 |
T |
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| Q |
514 |
caataac--aacnnnnnnnaatcctctgctatgtcacagattgtgatagctacttcaaaaggtcactcttcgtggtgggagagataggtggtaatgatta |
611 |
Q |
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| T |
4664165 |
caataacaaaactttttttaatcctctgctatgtcacagattgtgatagctacttcaaaaggtcactcttcgtggtgggagagataggtggtaatgatta |
4664264 |
T |
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| Q |
612 |
taactatgctgcctttgctggagatattattcatct |
647 |
Q |
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| T |
4664265 |
taactatgctgcctttgctggagatattactcatct |
4664300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 27 - 647
Target Start/End: Original strand, 4667121 - 4667740
Alignment:
| Q |
27 |
tatatacgtggctaaacgatattgctaagaatcacaatcaaatgtggttgatgcgacctcatttgaggttgtgttttaatcaaagagaaatagaaaatct |
126 |
Q |
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| T |
4667121 |
tatatacgtgactaaatgatattgctaagaatcaaaatcaaatgtgattgatgcggcctcatttgaggttgtgttttaatcaaagagaaatagaaaatct |
4667220 |
T |
|
| Q |
127 |
cgatattgaagtttagattgtagcagtagaccttattttaatacctattatctatgtattgacaattatatagtgttaataagtttcaataatggtgaat |
226 |
Q |
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|||||| ||| |||||||||| | ||| ||||| ||||||||||||| ||||||||||||| ||| | ||||||||||| ||||||||||||||| | |
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| T |
4667221 |
cgatatcaaaggttagattgtaaccgtaaaccttgttttaatacctatcatctatgtattgaatattgttgagtgttaataattttcaataatggtgagt |
4667320 |
T |
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| Q |
227 |
tttggttgcagctgaggcatacggattaccatatttgcaaccatatctgaaagtaatcaaaagcaatcaaatcatccgcaatggagtaaattttgcagtc |
326 |
Q |
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||||||| ||||| |||||||| |||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |||||||||||||||||| |
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| T |
4667321 |
tttggttatagctgtggcatacgaattaccatatttgcaaccatatctgaaagtgatcaaaagtcatcaaatcatccgcaaaggagtaaattttgcagtc |
4667420 |
T |
|
| Q |
327 |
gctggagccacagcgcttgatgtagaattcttcaacaaagaaatgggaaaattgctatggacaaatcattcattgaacattcagcttggctggtttaaga |
426 |
Q |
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|||||||||||||| ||||||||||||||||||||| ||| | || |||||||||||||| |||||||||||||||||||| | ||||||||||| |||| |
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| T |
4667421 |
gctggagccacagctcttgatgtagaattcttcaacgaaggagtgagaaaattgctatgggcaaatcattcattgaacatttaacttggctggttcaaga |
4667520 |
T |
|
| Q |
427 |
agctgaaaccttccttttgtacaactaaacaaggtaacatataacattcattgaccatcccaaatgaaactattgtatgaaattttccaataacaa---c |
523 |
Q |
| |
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|||||||||||||||| || |||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
4667521 |
agctgaaaccttccttgtgcacaactaaacaaggtaacat---tgagtcattgaccatcccaaatgaaactattgtatgaaa-tttccaataacaaaact |
4667616 |
T |
|
| Q |
524 |
nnnnnnnaatcctctgctatgtcacagattgtgatagctacttcaaaaggtcactcttcgtggtgggagagataggtggtaatgattataactatgctgc |
623 |
Q |
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| T |
4667617 |
tgtttttaatcctctgctatgtcacagattgtgatagctacttcaaaaggccactctttgtggtgggagagataggtggtaatgattataactatgctgc |
4667716 |
T |
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| Q |
624 |
ctttgctggagatattattcatct |
647 |
Q |
| |
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||||||||||||||||| |||||| |
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| T |
4667717 |
ctttgctggagatattactcatct |
4667740 |
T |
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