View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18323_high_20 (Length: 306)
Name: NF18323_high_20
Description: NF18323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18323_high_20 |
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Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 8042032 - 8042327
Alignment:
| Q |
1 |
taaaaacaactttttccaataaattattgtcactgttattataatcttaaaaataaataatcttaccttatggtttttgatttgttggggtgtgattgga |
100 |
Q |
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| T |
8042032 |
taaaaacaactttttccaataaattattgtcactgttattataatcttaaaaataaacaatcttaccttatggtttttgatttgttggggtgtgattggc |
8042131 |
T |
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| Q |
101 |
ggaacccaattgtgatttatccactggcgttgaaccctaagaaggtcttttggaaacaccatctcttccaagtctgtaaaacatacacggaaacttccat |
200 |
Q |
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| T |
8042132 |
ggaacccaattgtgatttatccactggcgatgaaccctaagaaggtcttttggaaacacaatctcttccgagtctgtaaaacacacacggaaacttccat |
8042231 |
T |
|
| Q |
201 |
tacctaaatcttcgctaacgcagccttcccaccacctgtgtttccggaacgcctccactttgtccctgatcttcacttcccaatcatcgctctctg |
296 |
Q |
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| T |
8042232 |
tccctaaatcttcaataacgcggccttcccaccaccgttgtttccggaaagcctccaccttgtcgccgatcttcacttcccaatcatcgctctctg |
8042327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 1 - 174
Target Start/End: Original strand, 8036603 - 8036776
Alignment:
| Q |
1 |
taaaaacaactttttccaataaattattgtcactgttattataatcttaaaaataaataatcttaccttatggtttttgatttgttggggtgtgattgga |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |
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| T |
8036603 |
taaaaacaactttttccaataaattattgtcactgttattataatcttaaaaataaactatcttaccttatggtttttgatttgttggggtgtgactggc |
8036702 |
T |
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| Q |
101 |
ggaacccaattgtgatttatccactggcgttgaaccctaagaaggtcttttggaaacaccatctcttccaagtc |
174 |
Q |
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| T |
8036703 |
ggaacccaattgtgattaatccactggcgatgaaccctaagaaggtcttttggaaacaccatctcttccaagtc |
8036776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 91 - 288
Target Start/End: Complemental strand, 8410509 - 8410312
Alignment:
| Q |
91 |
tgtgattggaggaacccaattgtgatttatccactggcgttgaaccctaagaaggtcttttggaaacaccatctcttccaagtctgtaaaacatacacgg |
190 |
Q |
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||||||||| ||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||| |||||| | ||||||||||||| ||||| |
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| T |
8410509 |
tgtgattgggggaacccaattgtgattaatccacttgcgatgaaccctaagaaggtcttttggaaacacaatctctcctgagtctgtaaaacacacacga |
8410410 |
T |
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| Q |
191 |
aaacttccattacctaaatcttcgctaacgcagccttcccaccacctgtgtttccggaacgcctccactttgtccctgatcttcacttcccaatcatc |
288 |
Q |
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| T |
8410409 |
aaacttccattccctaaatcttcgctaacacggccttcccaccacctgtgtttccggaacgcctccactttgtcgccgatcttcacttcccaatcatc |
8410312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 12 - 292
Target Start/End: Original strand, 9139681 - 9139946
Alignment:
| Q |
12 |
ttttccaataaattattgtcactgttattataatcttaaaaataaataatcttaccttatggtttttgatttgttggggtgtgattggaggaacccaatt |
111 |
Q |
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| T |
9139681 |
ttttccaacaaattattgctactgttattataatcttaaaaataaactaccttaccttatggttt---------------gtgattgggggaacccaatt |
9139765 |
T |
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| Q |
112 |
gtgatttatccactggcgttgaaccctaagaaggtcttttggaaacaccatctcttccaagtctgtaaaacatacacggaaacttccattacctaaatct |
211 |
Q |
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|||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||| ||||||||||||| ||| | || |||||||| ||||||||| |
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| T |
9139766 |
gtgattaatccactggcgatgaatcctaagaaggtcttttggaaacaccatctcttccgagtctgtaaaacacacaagaaatcttccattccctaaatct |
9139865 |
T |
|
| Q |
212 |
tcgctaacgcagccttcccaccacctgtgtttccggaacgcctccactttgtccctgatcttcacttcccaatcatcgctc |
292 |
Q |
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| T |
9139866 |
gcgctaacgcggccttcccaccaccggtgttttcggaatgcctccaccttgtcgccgatcttcacttcccaataatcgctc |
9139946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 11 - 168
Target Start/End: Complemental strand, 8416211 - 8416069
Alignment:
| Q |
11 |
tttttccaataaattattgtcactgttattataatcttaaaaataaataatcttaccttatggtttttgatttgttggggtgtgattggaggaacccaat |
110 |
Q |
| |
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| T |
8416211 |
tttttccaacaaattattgttactgttattataatcttaaaaataaactatcttaccttatggttt---------------gtgattgggggaacccaat |
8416127 |
T |
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| Q |
111 |
tgtgatttatccactggcgttgaaccctaagaaggtcttttggaaacaccatctcttc |
168 |
Q |
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| T |
8416126 |
tgtgattaatccactggcgatgaaccctaagaaggtcttttggaaacacaatctcttc |
8416069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 224 - 296
Target Start/End: Original strand, 8036776 - 8036848
Alignment:
| Q |
224 |
ccttcccaccacctgtgtttccggaacgcctccactttgtccctgatcttcacttcccaatcatcgctctctg |
296 |
Q |
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| T |
8036776 |
ccttcccaccacctgtgtttccggaacgcctccactttgtccctgatcttcacttcccaatcatcgctctctg |
8036848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 141
Target Start/End: Original strand, 8359968 - 8360036
Alignment:
| Q |
73 |
gtttttgatttgttggggtgtgattggaggaacccaattgtgatttatccactggcgttgaaccctaag |
141 |
Q |
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|||||||| ||||||| ||||||| | ||||||||||||||||| ||||| | || ||||||||||| |
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| T |
8359968 |
gtttttgagttgttggtttgtgattcggggaacccaattgtgattaatccatttacgatgaaccctaag |
8360036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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