View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18323_high_25 (Length: 249)
Name: NF18323_high_25
Description: NF18323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18323_high_25 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 8 - 239
Target Start/End: Original strand, 52249607 - 52249837
Alignment:
| Q |
8 |
ttttattacaaaaggagtacaacggaaagttatctcgggttttatcaatcattttcttaaaaaccacgtttcaaaccactttttatggctattaacgacc |
107 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
52249607 |
ttttattacgaaaggagtacaacggaaagttatctcgggttttatcaatcattttcttaaaaaccacgtttcaaatcactttttatggctattaacgacc |
52249706 |
T |
|
| Q |
108 |
atcgtttaacaattgacaaatataataatacagtatcatatcgattaaaaagttcaccgtttagnnnnnnnttgtcgattcagttagtgtttttgactat |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
52249707 |
atcgtttaacaattgacaaatataataatacagtatcatatcgattaaaaagttcaccgtttag-taaaaattgtcgattcagttagtgtttttgactat |
52249805 |
T |
|
| Q |
208 |
ttttgtatagattgcagatgtgtggtcctatg |
239 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |
|
|
| T |
52249806 |
ttttgtatagattgcagatgtgtgttcctatg |
52249837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 13 - 236
Target Start/End: Original strand, 41120054 - 41120275
Alignment:
| Q |
13 |
ttacaaaaggagtacaacggaaagttatctcgggttttatcaatcattttc--ttaaaaaccacgtttcaaaccactttttatggctattaacgaccatc |
110 |
Q |
| |
|
||||||||||||||| || ||||| | || | |||| || ||||||||| |||||||| ||||||||||| |||| |||||||| | ||| ||||| |
|
|
| T |
41120054 |
ttacaaaaggagtacgacagaaaggtgcctgagattttctctatcattttcgattaaaaactacgtttcaaactacttcttatggct-taaacaaccatg |
41120152 |
T |
|
| Q |
111 |
gtttaacaattgacaaata-taataatacagtatcatatcgattaaaaagttcaccgtttagnnnnnnnttgtcgattcagttagtgtttttgactattt |
209 |
Q |
| |
|
||||||||||||||||||| ||||| |||||| || ||| ||||||||||||||| |||||| ||||||||||||||||||||||| | | |
|
|
| T |
41120153 |
gtttaacaattgacaaatagtaatagtacagtctcgtattgattaaaaagttcacggtttagtaaaaaa-tgtcgattcagttagtgtttttggc---tc |
41120248 |
T |
|
| Q |
210 |
ttgtatagattgcagatgtgtggtcct |
236 |
Q |
| |
|
|||| |||||||||||| ||||||||| |
|
|
| T |
41120249 |
ttgtgtagattgcagatatgtggtcct |
41120275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University