View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18323_high_26 (Length: 242)

Name: NF18323_high_26
Description: NF18323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18323_high_26
NF18323_high_26
[»] chr5 (2 HSPs)
chr5 (11-227)||(24394963-24395179)
chr5 (179-227)||(41136561-41136609)
[»] chr2 (3 HSPs)
chr2 (32-223)||(19124958-19125149)
chr2 (28-227)||(45550513-45550712)
chr2 (163-227)||(17364145-17364209)
[»] chr3 (5 HSPs)
chr3 (28-228)||(49834092-49834292)
chr3 (149-227)||(8533160-8533238)
chr3 (28-92)||(43901512-43901576)
chr3 (38-145)||(12019366-12019471)
chr3 (14-68)||(19583557-19583611)
[»] chr6 (8 HSPs)
chr6 (149-227)||(31136296-31136374)
chr6 (44-133)||(3356600-3356689)
chr6 (176-227)||(30631416-30631468)
chr6 (149-224)||(26947654-26947729)
chr6 (28-78)||(21671501-21671551)
chr6 (28-78)||(21678917-21678967)
chr6 (195-227)||(34209545-34209577)
chr6 (11-49)||(18386305-18386343)
[»] chr8 (1 HSPs)
chr8 (116-227)||(19706494-19706605)
[»] chr4 (6 HSPs)
chr4 (177-227)||(12247993-12248043)
chr4 (138-227)||(24609141-24609230)
chr4 (163-227)||(6095378-6095442)
chr4 (11-78)||(56079379-56079446)
chr4 (149-227)||(12493160-12493238)
chr4 (195-227)||(39667937-39667969)
[»] chr7 (2 HSPs)
chr7 (180-224)||(36053884-36053928)
chr7 (177-222)||(9418803-9418848)
[»] chr1 (1 HSPs)
chr1 (149-227)||(25123927-25124005)
[»] scaffold0157 (1 HSPs)
scaffold0157 (149-227)||(27239-27317)


Alignment Details
Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 11 - 227
Target Start/End: Original strand, 24394963 - 24395179
Alignment:
Q  11 cacagagaggtatgcaaaataaagcacaaggcttaacaaagacacaaaactctaaaatactctttctttgttatgatggctttgaatacttcacaacggt 110  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||| ||||| |||    
T  24394963 cacagagaggtatgcaaaataaagcataaggcttaacaaagacacaaaactctaaaatactctttctttgatatgacgactttgaatactccacaagggt 24395062  T
Q  111 ttgaatctttctttatatagccaaggttctgaatgagcttttctttacaggttaaacaatcacccgaccaaaacgtatattcgttcttcacaatattcta 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  24395063 ttgaatctttctttatatagccaaggttctgaatgagcttttctttacaggttaaataatcacccgaccaaaacgtatattcgttcttcacaatattcta 24395162  T
Q  211 ggagcaaatatattatt 227  Q
    |||||||||||||||||    
T  24395163 ggagcaaatatattatt 24395179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 227
Target Start/End: Original strand, 41136561 - 41136609
Alignment:
Q  179 caaaacgtatattcgttcttcacaatattctaggagcaaatatattatt 227  Q
    ||||| ||||||||| |||||||||| |||| |||||||||||||||||    
T  41136561 caaaatgtatattcgatcttcacaatcttcttggagcaaatatattatt 41136609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 88; Significance: 2e-42; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 32 - 223
Target Start/End: Original strand, 19124958 - 19125149
Alignment:
Q  32 aagcacaaggcttaacaaagacacaaaactctaaaatactctttctttgttatgatggctttgaatacttcacaacggtttgaatctttctttatatagc 131  Q
    ||||| |||||||||||||||||| |||| |||||| |||||||||||| ||||| ||||| |||| |||||||| ||||||| || | |||||||||||    
T  19124958 aagcataaggcttaacaaagacacgaaaccctaaaagactctttctttgatatgacggcttcgaatccttcacaagggtttgagtcctcctttatatagc 19125057  T
Q  132 caaggttctgaatgagcttttctttacaggttaaacaatcacccgaccaaaacgtatattcgttcttcacaatattctaggagcaaatatat 223  Q
    |||| || |||||| |||||||||  || | |||||||||| | |||||||||| ||||  | |||||||||| ||||||||||||||||||    
T  19125058 caagattttgaatgggcttttcttcgcaagctaaacaatcagcagaccaaaacgaatatatggtcttcacaattttctaggagcaaatatat 19125149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 28 - 227
Target Start/End: Original strand, 45550513 - 45550712
Alignment:
Q  28 aataaagcacaaggcttaacaaagacacaaaactctaaaatactctttctttgttatgatggctttgaatacttcacaacggtttgaatctttctttata 127  Q
    |||||||||||||||||||||||||||| |||| |||||| |||||||||||| ||||| ||||| ||||||||||||| ||||||| || ||| |||||    
T  45550513 aataaagcacaaggcttaacaaagacacgaaaccctaaaagactctttctttgatatgacggcttcgaatacttcacaagggtttgagtc-ttccttata 45550611  T
Q  128 tagccaaggttctgaatgagc-ttttctttacaggttaaacaatcacccgaccaaaacgtatattcgttcttcacaatattctaggagcaaatatattat 226  Q
     |  ||     |    || || ||||||| | ||| |||||||  | | |||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  45550612 caatcattcaacaacttgggctttttcttcataggctaaacaaaaaacagaccaaaacgtatattcggtcttcacaatattctaggagcaaatatattat 45550711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 227
Target Start/End: Original strand, 17364145 - 17364209
Alignment:
Q  163 taaacaatcacccgaccaaaacgtatattcgttcttcacaatattctaggagcaaatatattatt 227  Q
    |||| ||||| | ||||||| | |||||||  |||||||||| |||||| |||||||||||||||    
T  17364145 taaagaatcagcagaccaaatcatatattcagtcttcacaattttctagaagcaaatatattatt 17364209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 28 - 228
Target Start/End: Original strand, 49834092 - 49834292
Alignment:
Q  28 aataaagcacaaggcttaacaaagacacaaaactctaaaatactctttctttgttatgatggctttgaatacttcacaacggtttgaatctttctttata 127  Q
    |||||||||||||||||||||||||||| ||||  ||||| ||| || ||||| || || ||||| ||  | |||||||  |||||| | || |||||||    
T  49834092 aataaagcacaaggcttaacaaagacacgaaaccttaaaagacttttcctttgatacgacggcttcgatcaattcacaagagtttgagttttcctttata 49834191  T
Q  128 tagccaaggttctgaatgagcttttctttacaggttaaacaatcacccgaccaaaacgtatattcgttcttcacaatattctaggagcaaatatattatt 227  Q
    || ||||| || |||||| | ||||||| |||   ||||| |||| | |||||||||| ||||  | ||| |||||  ||||||||||||||||||||||    
T  49834192 taaccaagattttgaatgggtttttcttcacaaactaaactatcagcagaccaaaacgaatatatggtctccacaactttctaggagcaaatatattatt 49834291  T
Q  228 g 228  Q
    |    
T  49834292 g 49834292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 149 - 227
Target Start/End: Original strand, 8533160 - 8533238
Alignment:
Q  149 ttttctttacaggttaaacaatcacccgaccaaaacgtatattcgttcttcacaatattctaggagcaaatatattatt 227  Q
    ||||||| ||| | |||||||||| | ||||||||||||||| || | |||||||||||||||||| ||||||||||||    
T  8533160 ttttcttcacatgctaaacaatcagcagaccaaaacgtatatacggtgttcacaatattctaggagaaaatatattatt 8533238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 28 - 92
Target Start/End: Complemental strand, 43901576 - 43901512
Alignment:
Q  28 aataaagcacaaggcttaacaaagacacaaaactctaaaatactctttctttgttatgatggctt 92  Q
    ||||||||||||| ||||||||||||||||||| |||||| | | |||||||| ||||| |||||    
T  43901576 aataaagcacaagtcttaacaaagacacaaaaccctaaaagaatatttctttgatatgacggctt 43901512  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 145
Target Start/End: Complemental strand, 12019471 - 12019366
Alignment:
Q  38 aaggcttaacaaa-gacacaaaactctaaaatactctttctttgttatgatggctttgaatacttcacaacggtttgaatctttctttatatagccaagg 136  Q
    ||||||||||||| |||||||||| |||||| ||||  |||||| ||||| |||||  ||||||||| || ||||||| |||| |||||||||| || ||    
T  12019471 aaggcttaacaaaagacacaaaaccctaaaagactc--tctttgatatgacggcttcaaatacttca-aagggtttgagtcttcctttatatagtcatgg 12019375  T
Q  137 ttctgaatg 145  Q
    || ||||||    
T  12019374 ttttgaatg 12019366  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 68
Target Start/End: Complemental strand, 19583611 - 19583557
Alignment:
Q  14 agagaggtatgcaaaataaagcacaaggcttaacaaagacacaaaactctaaaat 68  Q
    ||||||||||  |||||||||||||||||||| ||||||| |||||  |||||||    
T  19583611 agagaggtataaaaaataaagcacaaggcttagcaaagactcaaaatcctaaaat 19583557  T

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Target: chr6 (Bit Score: 51; Significance: 2e-20; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 149 - 227
Target Start/End: Complemental strand, 31136374 - 31136296
Alignment:
Q  149 ttttctttacaggttaaacaatcacccgaccaaaacgtatattcgttcttcacaatattctaggagcaaatatattatt 227  Q
    ||||||| ||| | |||||||||| | |||||||||||||||||| |||||||||||||||||||| ||||||||||||    
T  31136374 ttttcttcacatgctaaacaatcagcagaccaaaacgtatattcgatcttcacaatattctaggagaaaatatattatt 31136296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 44 - 133
Target Start/End: Complemental strand, 3356689 - 3356600
Alignment:
Q  44 taacaaagacacaaaactctaaaatactctttctttgttatgatggctttgaatacttcacaacggtttgaatctttctttatatagcca 133  Q
    |||||||||||| ||||||||||| |||||||||||| ||||| | |||  |||||||||||   |||||| |||| ||||| |||||||    
T  3356689 taacaaagacacgaaactctaaaagactctttctttgatatgacgacttcaaatacttcacatgagtttgagtcttcctttaaatagcca 3356600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 176 - 227
Target Start/End: Original strand, 30631416 - 30631468
Alignment:
Q  176 gaccaaaacgtatattcgttcttcacaatattctaggagc-aaatatattatt 227  Q
    |||||||||||||||||| |||||||||| |||||||||| ||||||||||||    
T  30631416 gaccaaaacgtatattcggtcttcacaatcttctaggagcaaaatatattatt 30631468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 149 - 224
Target Start/End: Complemental strand, 26947729 - 26947654
Alignment:
Q  149 ttttctttacaggttaaacaatcacccgaccaaaacgtatattcgttcttcacaatattctaggagcaaatatatt 224  Q
    ||||||| ||||| |||||||||| | ||||||| | |||||||  | |||||||||||||||||| |||||||||    
T  26947729 ttttcttcacaggctaaacaatcagcagaccaaatcatatattcagttttcacaatattctaggagaaaatatatt 26947654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 28 - 78
Target Start/End: Complemental strand, 21671551 - 21671501
Alignment:
Q  28 aataaagcacaaggcttaacaaagacacaaaactctaaaatactctttctt 78  Q
    ||||||||||||||||||||||||| || |||| |||||| ||||||||||    
T  21671551 aataaagcacaaggcttaacaaagatacgaaaccctaaaagactctttctt 21671501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 28 - 78
Target Start/End: Complemental strand, 21678967 - 21678917
Alignment:
Q  28 aataaagcacaaggcttaacaaagacacaaaactctaaaatactctttctt 78  Q
    ||||||||||||||||||||||||| || |||| |||||| ||||||||||    
T  21678967 aataaagcacaaggcttaacaaagatacgaaaccctaaaagactctttctt 21678917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 195 - 227
Target Start/End: Original strand, 34209545 - 34209577
Alignment:
Q  195 tcttcacaatattctaggagcaaatatattatt 227  Q
    |||||||||||||||||||||||||||||||||    
T  34209545 tcttcacaatattctaggagcaaatatattatt 34209577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 49
Target Start/End: Original strand, 18386305 - 18386343
Alignment:
Q  11 cacagagaggtatgcaaaataaagcacaaggcttaacaa 49  Q
    ||||||||||| | |||||||||||||||||||||||||    
T  18386305 cacagagaggtgtacaaaataaagcacaaggcttaacaa 18386343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 116 - 227
Target Start/End: Complemental strand, 19706605 - 19706494
Alignment:
Q  116 tctttctttatatagccaaggttctgaatgagcttttctttacaggttaaacaatcacccgaccaaaacgtatattcgttcttcacaatattctaggagc 215  Q
    |||| ||||||||||||| | || |||||| ||||||||| |  || |||||||||| |  ||||||||| | ||  | |||||||||| ||||||||||    
T  19706605 tcttcctttatatagccatgattatgaatgggcttttcttcattggctaaacaatcagcataccaaaacgaaaatatggtcttcacaattttctaggagc 19706506  T
Q  216 aaatatattatt 227  Q
    ||||||||||||    
T  19706505 aaatatattatt 19706494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 177 - 227
Target Start/End: Complemental strand, 12248043 - 12247993
Alignment:
Q  177 accaaaacgtatattcgttcttcacaatattctaggagcaaatatattatt 227  Q
    ||||||||||||||||| |||||||||| ||||||||| ||||||||||||    
T  12248043 accaaaacgtatattcggtcttcacaatcttctaggagaaaatatattatt 12247993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 227
Target Start/End: Original strand, 24609141 - 24609230
Alignment:
Q  138 tctgaatgagcttttctttacaggttaaacaatcacccgaccaaaacgtatattcgttcttcacaatattctaggagcaaatatattatt 227  Q
    |||||||| | ||||||| ||||| || ||||||| | |||||||| | ||||  | |||||||||| ||||||||||||||||||||||    
T  24609141 tctgaatggggttttcttcacaggctagacaatcagcagaccaaaatgaatatatggtcttcacaattttctaggagcaaatatattatt 24609230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 163 - 227
Target Start/End: Complemental strand, 6095442 - 6095378
Alignment:
Q  163 taaacaatcacccgaccaaaacgtatattcgttcttcacaatattctaggagcaaatatattatt 227  Q
    |||||||||| | |||||||||||||||  | |||||| ||| ||||||||||||||||||||||    
T  6095442 taaacaatcaacagaccaaaacgtatatatgatcttcataattttctaggagcaaatatattatt 6095378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 78
Target Start/End: Original strand, 56079379 - 56079446
Alignment:
Q  11 cacagagaggtatgcaaaataaagcacaaggcttaacaaagacacaaaactctaaaatactctttctt 78  Q
    ||||||||||||| |||||||||||||| |||||||||| ||||  |||| || ||| ||||||||||    
T  56079379 cacagagaggtatacaaaataaagcacatggcttaacaaggacatgaaaccctgaaagactctttctt 56079446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 227
Target Start/End: Original strand, 12493160 - 12493238
Alignment:
Q  149 ttttctttacaggttaaacaatcacccgaccaaaacgtatattcgttcttcacaatattctaggagcaaatatattatt 227  Q
    ||||||| ||| | |||||||||| | || |||| | ||||||   ||||||||||||||||||||||||||| |||||    
T  12493160 ttttcttcacatgctaaacaatcatcagatcaaatcatatatttagtcttcacaatattctaggagcaaatatgttatt 12493238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 227
Target Start/End: Complemental strand, 39667969 - 39667937
Alignment:
Q  195 tcttcacaatattctaggagcaaatatattatt 227  Q
    |||||||||||||||||| ||||||||||||||    
T  39667969 tcttcacaatattctaggggcaaatatattatt 39667937  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 180 - 224
Target Start/End: Original strand, 36053884 - 36053928
Alignment:
Q  180 aaaacgtatattcgttcttcacaatattctaggagcaaatatatt 224  Q
    |||| |||||||||||||||||||||||||| |||||||||||||    
T  36053884 aaaaagtatattcgttcttcacaatattctatgagcaaatatatt 36053928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 177 - 222
Target Start/End: Complemental strand, 9418848 - 9418803
Alignment:
Q  177 accaaaacgtatattcgttcttcacaatattctaggagcaaatata 222  Q
    ||||||||||||||||  |||||||||| ||||||||| |||||||    
T  9418848 accaaaacgtatattcagtcttcacaatcttctaggaggaaatata 9418803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 149 - 227
Target Start/End: Original strand, 25123927 - 25124005
Alignment:
Q  149 ttttctttacaggttaaacaatcacccgaccaaaacgtatattcgttcttcacaatattctaggagcaaatatattatt 227  Q
    ||||||| ||||| |||| |||||   ||| |||||||||||||| |||| |||||||  |||||||||||||||||||    
T  25123927 ttttcttcacaggctaaataatcagtagacgaaaacgtatattcggtcttgacaatatattaggagcaaatatattatt 25124005  T

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Target: scaffold0157 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 227
Target Start/End: Complemental strand, 27317 - 27239
Alignment:
Q  149 ttttctttacaggttaaacaatcacccgaccaaaacgtatattcgttcttcacaatattctaggagcaaatatattatt 227  Q
    ||||||| ||| | |||||||||| | || |||| | ||||||   ||||||||||||||||||||||||||| |||||    
T  27317 ttttcttcacatgctaaacaatcatcagatcaaatcatatatttagtcttcacaatattctaggagcaaatatgttatt 27239  T

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