View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18323_high_28 (Length: 239)
Name: NF18323_high_28
Description: NF18323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18323_high_28 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 18 - 239
Target Start/End: Original strand, 51270711 - 51270935
Alignment:
| Q |
18 |
ggaagtgcctttgttcgttactttccatttcataaatgcatatgaagaggaagatgaagatgggagggtaactgctgttattgctgactgctgtgagcac |
117 |
Q |
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| T |
51270711 |
ggaagtgcctttgttcgttactttccatttcataaatgcatatgaagaggaagatgaagatgggagggtaactgctgttattgctgactgctgtgagcac |
51270810 |
T |
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| Q |
118 |
aattcaaacaccgacattcttgacaagcttagattacagaaccttcgctcatttaacggcgaagatgttctgccagatgctaggtacgta---tgacatc |
214 |
Q |
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| T |
51270811 |
aattcaaacaccgacattcttgacaagcttagattacagaaccttcgctcatttaacggcgaagatgttctgccagatgctaggtacgtattttgacatc |
51270910 |
T |
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| Q |
215 |
ttaattattttaccttggcccttcc |
239 |
Q |
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| T |
51270911 |
ttaattattttaccttggcccttcc |
51270935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 22 - 230
Target Start/End: Original strand, 23308850 - 23309061
Alignment:
| Q |
22 |
gtgcctttgttcgttactttccatttcataaatgcatatgaagaggaagatgaagatgggagggtaactgctgttattgctgactgctgtgagcacaatt |
121 |
Q |
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| T |
23308850 |
gtgcctttgttcgttactttccatttcataaatgcatatgaagaggaagatgaagatgggagggtgactgctgttattgcagactgctgtgagcacaatt |
23308949 |
T |
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| Q |
122 |
caaacaccgacattcttgacaagcttagattacagaaccttcgctcatttaacggcgaagatgttctgccagatgctaggtacgta---tgacatcttaa |
218 |
Q |
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||||||| ||||||||||||||||||| |||||| ||||||||||||||||| ||| |||||||||| |||||||||||||||||| ||||||||||| |
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| T |
23308950 |
caaacactgacattcttgacaagcttaaattacaaaaccttcgctcatttaatggcaaagatgttctaccagatgctaggtacgtattttgacatcttaa |
23309049 |
T |
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| Q |
219 |
ttattttacctt |
230 |
Q |
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| T |
23309050 |
ttattttacctt |
23309061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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