View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18323_high_3 (Length: 615)
Name: NF18323_high_3
Description: NF18323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18323_high_3 |
 | |
|
| [»] scaffold0013 (1 HSPs) |
| | |
|
| [»] scaffold0076 (2 HSPs) |
| | |
|
| [»] scaffold0208 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 372; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 116 - 600
Target Start/End: Complemental strand, 20134080 - 20133601
Alignment:
| Q |
116 |
tttctgctattacaatactttttgtttatcgttttatgcgatataggcactgtgatagagtgataattaatattctggagacaataggttggactttaat |
215 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||| |||| ||||||||| || |
|
|
| T |
20134080 |
tttctgctattacaatactttttgttcgtcgttt-atgcgatatatgcactgtgatagagtgataattaatattctagaga-------ttggactttcat |
20133989 |
T |
|
| Q |
216 |
ccttgattctattactactactac---agcaaggatattgtatttcctaagtaattttcagggcctcaagattcaacaaacaaactcaatttctcaccta |
312 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||| ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20133988 |
ccttgattctattactactactactacagccagggtattgtacttcctaagtaattttcaggacctcaagattcaacaaacaaactcaatttctcaccta |
20133889 |
T |
|
| Q |
313 |
catcaacccggttatcagtgaaatgtatggcttttgatttcactttatggatttagttgcctttggttcgtgcggtagaacatatgtgtttctccgtttt |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20133888 |
catcaacccggttatcagtgaaatgtatggctttcgatttcactttatgaatttagttgcctttggttcgtgcggtagaacatatgtgtttctccgtttt |
20133789 |
T |
|
| Q |
413 |
acgatacgagggttttaaattttatgagaattctgttactgcctttcgttatcgaatatatatggtttaaaataagtttctctcccaactatgaaacact |
512 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
20133788 |
acgataagagggttttaaattttatgagaattctgttactgcctttcgttatcaaatatatatggtttaaaataagtttctctcccaactacgaaacact |
20133689 |
T |
|
| Q |
513 |
attacgaacggcttatcgtttatcaattacaattcaagatcgaattttattggagttatactatatatgttggtcaggctatatatct |
600 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
20133688 |
attacgaatggcttatcatttatcaattacaattcaagatcgaattttattggagttatattatatatgttggtcaggctatatatct |
20133601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 342 - 600
Target Start/End: Complemental strand, 1865 - 1617
Alignment:
| Q |
342 |
gcttttgatttcactttatggatttagttgcctttggttcgtgcggtagaacatatgtgtttctccgttttacgatacgagggttttaaattttatgaga |
441 |
Q |
| |
|
||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1865 |
gctttcgatttcactttatgaatttagttgcctttggttcgtgcagtagaacatat----ttctccgttttacgatacgagggttttaaattttatgaga |
1770 |
T |
|
| Q |
442 |
attctgttactgcctttcgttatcgaatatatatggtttaaaataagtttctctcccaactatgaaacactattacgaacggcttatcgtttatcaatta |
541 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| ||||||||||||| |
|
|
| T |
1769 |
attctgttactgcctttcgttatcgaatatatatggtttaaaataagtttctctcccaactatgaaacactattatgaatggcttaacgtttatcaatta |
1670 |
T |
|
| Q |
542 |
caattcaagatcgaattttattggagttatactatatatgttggtcaggctatatatct |
600 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
1669 |
caattcaagatcgaatttta------ttatactatatatgttggtcaggctatatatct |
1617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 9 - 120
Target Start/End: Complemental strand, 20134243 - 20134132
Alignment:
| Q |
9 |
aggcaatattccgaactttgccaacatcgccgccgaggaatataggcggcctagacgtatgaccacctaaacatcgcagaagtcatgatatcgtgtcagg |
108 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20134243 |
aggcaatattccgaacttcgccaacaccgccgccgaggaatataggcggcctagacgtatgaccacctaaacatcgcagaagtcatgatatcgtgtcagg |
20134144 |
T |
|
| Q |
109 |
tggtacctttct |
120 |
Q |
| |
|
|||||||||||| |
|
|
| T |
20134143 |
tggtacctttct |
20134132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 176 - 336
Target Start/End: Original strand, 14674569 - 14674726
Alignment:
| Q |
176 |
tgataattaatattctggagacaataggttggactttaatccttgattctattactactactacagcaaggatattgtatttcctaagtaattttcaggg |
275 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||| || |||| ||||| | | || ||||||||||||| | ||||| |||||||||||||||||||| |
|
|
| T |
14674569 |
tgataattgatattttggagacaataggttggacattcatccctgatt---tcattaatactacagcaaggttgttgtacttcctaagtaattttcaggg |
14674665 |
T |
|
| Q |
276 |
cctcaagattcaacaaacaaactcaatttctcacctacatcaacccggttatcagtgaaat |
336 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
14674666 |
cctcaagattcaacaaacaaactcaatttctcacctacatcaacccggttataagtgaaat |
14674726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 176 - 328
Target Start/End: Original strand, 31710199 - 31710348
Alignment:
| Q |
176 |
tgataattaatattctggagacaataggttggactttaatccttgattctattactactactacagcaaggatattgtatttcctaagtaattttcaggg |
275 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||| || |||| ||||| | | || ||||||||||||| | ||||| |||||||||||||||||||| |
|
|
| T |
31710199 |
tgataattgatattttggagacaataggttggaccttcatccctgatt---tcattaatactacagcaagggtgttgtacttcctaagtaattttcaggg |
31710295 |
T |
|
| Q |
276 |
cctcaagattcaacaaacaaactcaatttctcacctacatcaacccggttatc |
328 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| || ||||| | |||||||| |
|
|
| T |
31710296 |
cctcaagattcaacaaacgaactcaatttctcatctccatcagctcggttatc |
31710348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 176 - 254
Target Start/End: Original strand, 18974406 - 18974484
Alignment:
| Q |
176 |
tgataattaatattctggagacaataggttggactttaatccttgattctattactactactacagcaaggatattgta |
254 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| || ||||||| |
|
|
| T |
18974406 |
tgataatggatattttggagacaataggttggactttcatccttgattctattactactactacagcacgggtattgta |
18974484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 276 - 334
Target Start/End: Complemental strand, 17535348 - 17535290
Alignment:
| Q |
276 |
cctcaagattcaacaaacaaactcaatttctcacctacatcaacccggttatcagtgaa |
334 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||| || |||| || ||||||||||||| |
|
|
| T |
17535348 |
cctcaagattcaactaacaagctcaatttctcatctccatcgtcctggttatcagtgaa |
17535290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 372; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 116 - 600
Target Start/End: Original strand, 44357991 - 44358470
Alignment:
| Q |
116 |
tttctgctattacaatactttttgtttatcgttttatgcgatataggcactgtgatagagtgataattaatattctggagacaataggttggactttaat |
215 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||| |||| ||||||||| || |
|
|
| T |
44357991 |
tttctgctattacaatactttttgttcgtcgttt-atgcgatatatgcactgtgatagagtgataattaatattctagaga-------ttggactttcat |
44358082 |
T |
|
| Q |
216 |
ccttgattctattact---actactacagcaaggatattgtatttcctaagtaattttcagggcctcaagattcaacaaacaaactcaatttctcaccta |
312 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||| ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44358083 |
ccttgattctattactactactactacagccagggtattgtacttcctaagtaattttcaggacctcaagattcaacaaacaaactcaatttctcaccta |
44358182 |
T |
|
| Q |
313 |
catcaacccggttatcagtgaaatgtatggcttttgatttcactttatggatttagttgcctttggttcgtgcggtagaacatatgtgtttctccgtttt |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44358183 |
catcaacccggttatcagtgaaatgtatggctttcgatttcactttatgaatttagttgcctttggttcgtgcggtagaacatatgtgtttctccgtttt |
44358282 |
T |
|
| Q |
413 |
acgatacgagggttttaaattttatgagaattctgttactgcctttcgttatcgaatatatatggtttaaaataagtttctctcccaactatgaaacact |
512 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
44358283 |
acgataagagggttttaaattttatgagaattctgttactgcctttcgttatcaaatatatatggtttaaaataagtttctctcccaactacgaaacact |
44358382 |
T |
|
| Q |
513 |
attacgaacggcttatcgtttatcaattacaattcaagatcgaattttattggagttatactatatatgttggtcaggctatatatct |
600 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
44358383 |
attacgaatggcttatcatttatcaattacaattcaagatcgaattttattggagttatattatatatgttggtcaggctatatatct |
44358470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 9 - 120
Target Start/End: Original strand, 44357828 - 44357939
Alignment:
| Q |
9 |
aggcaatattccgaactttgccaacatcgccgccgaggaatataggcggcctagacgtatgaccacctaaacatcgcagaagtcatgatatcgtgtcagg |
108 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44357828 |
aggcaatattccgaacttcgccaacaccgccgccgaggaatataggcggcctagacgtatgaccacctaaacatcgcagaagtcatgatatcgtgtcagg |
44357927 |
T |
|
| Q |
109 |
tggtacctttct |
120 |
Q |
| |
|
|||||||||||| |
|
|
| T |
44357928 |
tggtacctttct |
44357939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 185 - 254
Target Start/End: Complemental strand, 5331457 - 5331388
Alignment:
| Q |
185 |
atattctggagacaataggttggactttaatccttgattctattactactactacagcaaggatattgta |
254 |
Q |
| |
|
||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| || ||||||| |
|
|
| T |
5331457 |
atattttggagacaataggttggactttcatccttgattctattactactactacagcacgggtattgta |
5331388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 366 - 600
Target Start/End: Complemental strand, 135297 - 135069
Alignment:
| Q |
366 |
tagttgcctttggttcgtgcggtagaacatatgtgtttctccgttttacgatacgagggttttaaattttatgagaattctgttactgcctttcgttatc |
465 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
135297 |
tagttgcctttggttcgtgcggtagaacatatgtgtttctccgttttacgatacgagggttttaaattttatgagaattctgttactgcctttcgttatc |
135198 |
T |
|
| Q |
466 |
gaatatatatggtttaaaataagtttctctcccaactatgaaacactattacgaacggcttatcgtttatcaattacaattcaagatcgaattttattgg |
565 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
135197 |
gaatatatatggtttaaaataagtttctctcccaactatgaaacactattacgaatggcttatcgtttatcaattacaattcaagatcgaatttta---- |
135102 |
T |
|
| Q |
566 |
agttatactatatatgttggtcaggctatatatct |
600 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| |
|
|
| T |
135101 |
--ttatactatatatgttggtcaagctatatatct |
135069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0076 (Bit Score: 173; Significance: 1e-92; HSPs: 2)
Name: scaffold0076
Description:
Target: scaffold0076; HSP #1
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 116 - 336
Target Start/End: Original strand, 47786 - 48005
Alignment:
| Q |
116 |
tttctgctattacaatactttttgtttatcgttttatgcgatataggcactgtgatagagtgataattaatattctggagacaataggttggactttaat |
215 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| || |
|
|
| T |
47786 |
tttctgctattacaatactttttgttcgtcgttt-atgcgatatatgcactgtgatagagtgataattaatattctggagacaatagattggactttcat |
47884 |
T |
|
| Q |
216 |
ccttgattctattactactactacagcaaggatattgtatttcctaagtaattttcagggcctcaagattcaacaaacaaactcaatttctcacctacat |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
47885 |
ccttgattctattactactactacagcaagagtattgtacttcctaagtaattttcagggcctcaagattcaacaaacgaactcaatttctcacctacat |
47984 |
T |
|
| Q |
316 |
caacccggttatcagtgaaat |
336 |
Q |
| |
|
|||||||||||||| |||||| |
|
|
| T |
47985 |
caacccggttatcaatgaaat |
48005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0076; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 9 - 120
Target Start/End: Original strand, 47623 - 47734
Alignment:
| Q |
9 |
aggcaatattccgaactttgccaacatcgccgccgaggaatataggcggcctagacgtatgaccacctaaacatcgcagaagtcatgatatcgtgtcagg |
108 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
47623 |
aggcaatattccgaacttcgccaacaccgccgccgaggaatataggcggcctagacgtatgaccacctaaacatcacagaagtcatgatatcgtgtcagg |
47722 |
T |
|
| Q |
109 |
tggtacctttct |
120 |
Q |
| |
|
|||||||||||| |
|
|
| T |
47723 |
tggtacctttct |
47734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 148; Significance: 8e-78; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 155 - 330
Target Start/End: Original strand, 12325718 - 12325893
Alignment:
| Q |
155 |
gatataggcactgtgatagagtgataattaatattctggagacaataggttggactttaatccttgattctattactactactacagcaaggatattgta |
254 |
Q |
| |
|
|||||| |||||||||||| |||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
12325718 |
gatatatgcactgtgatagggtgataattaatattctggagacaatagattggactttcatccttgattctattactactactacagcaagggtattgta |
12325817 |
T |
|
| Q |
255 |
tttcctaagtaattttcagggcctcaagattcaacaaacaaactcaatttctcacctacatcaacccggttatcag |
330 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
12325818 |
cttcctaagtaattttcagggcctcaagattcaacaaacgaactcaatttctcacctacatcaacccggttatcag |
12325893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 9 - 120
Target Start/End: Original strand, 12325445 - 12325553
Alignment:
| Q |
9 |
aggcaatattccgaactttgccaacatcgccgccgaggaatataggcggcctagacgtatgaccacctaaacatcgcagaagtcatgatatcgtgtcagg |
108 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12325445 |
aggcaatattccgaacttcgccaaca---ccgccgaggaagataggcagcctagacgtatgaccacctaaacatcgcagaagtcatgatatcgtgtcagg |
12325541 |
T |
|
| Q |
109 |
tggtacctttct |
120 |
Q |
| |
|
|||||||||||| |
|
|
| T |
12325542 |
tggtacctttct |
12325553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 99; Significance: 1e-48; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 175 - 346
Target Start/End: Original strand, 11203439 - 11203610
Alignment:
| Q |
175 |
gtgataattaatattctggagacaataggttggactttaatccttgattctattactactactacagcaaggatattgtatttcctaagtaattttcagg |
274 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||||||| |||||||||| |||||| |||||||||| | ||||||| ||||||||||||||||||| |
|
|
| T |
11203439 |
gtgataattactattctggagacaatagattggactttcatccttgatttcattact---actacagcaaaggtattgtacttcctaagtaattttcagg |
11203535 |
T |
|
| Q |
275 |
gcctcaagattcaacaaacaaactcaatttctcacctacatcaacccggtt---atcagtgaaatgtatggcttt |
346 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||| ||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
11203536 |
gcctcaagattcaacaaatgaactcaacttctcccctacatcaacccggttatcatcagtgaaatgtatggcttt |
11203610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 71; Significance: 7e-32; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 176 - 328
Target Start/End: Complemental strand, 4281689 - 4281540
Alignment:
| Q |
176 |
tgataattaatattctggagacaataggttggactttaatccttgattctattactactactacagcaaggatattgtatttcctaagtaattttcaggg |
275 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||| || |||| ||||| | | || ||||||||||||| | ||||| |||||| ||||||||||||| |
|
|
| T |
4281689 |
tgataatggatattttggagacaataggttggaccttcatccctgatt---tcattaatactacagcaagggtgttgtacttcctacgtaattttcaggg |
4281593 |
T |
|
| Q |
276 |
cctcaagattcaacaaacaaactcaatttctcacctacatcaacccggttatc |
328 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| || ||||| |||||||||| |
|
|
| T |
4281592 |
cctcaagattcaacaaacgaactcaatttctcatctccatcagcccggttatc |
4281540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 3e-22; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 176 - 254
Target Start/End: Complemental strand, 19807279 - 19807201
Alignment:
| Q |
176 |
tgataattaatattctggagacaataggttggactttaatccttgattctattactactactacagcaaggatattgta |
254 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| || ||||||| |
|
|
| T |
19807279 |
tgataatggatattttggagacaataggttggactttcatccttgattctattactactactacagcacgggtattgta |
19807201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 239 - 328
Target Start/End: Original strand, 17594762 - 17594851
Alignment:
| Q |
239 |
cagcaaggatattgtatttcctaagtaattttcagggcctcaagattcaacaaacaaactcaatttctcacctacatcaacccggttatc |
328 |
Q |
| |
|
|||||||| | || || ||||||||||||||||||| |||||||||||||||||| |||||||||||||| || ||||| || ||||||| |
|
|
| T |
17594762 |
cagcaagggtgttatacttcctaagtaattttcaggtcctcaagattcaacaaacgaactcaatttctcatctccatcagcctggttatc |
17594851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 176 - 328
Target Start/End: Original strand, 8165833 - 8165979
Alignment:
| Q |
176 |
tgataattaatattctggagacaataggttggactttaatccttgattctattactactactacagcaaggatattgtatttcctaagtaattttcaggg |
275 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||| || || ||||||| |||| ||| || |||| |||||||||||||||||||||||||| |
|
|
| T |
8165833 |
tgataattgatattttggagacaataggttggaccttcattcttgatttcattaataccac------aagggcgttgtatttcctaagtaattttcaggg |
8165926 |
T |
|
| Q |
276 |
cctcaagattcaacaaacaaactcaatttctcacctacatcaacccggttatc |
328 |
Q |
| |
|
|||||||||||||| || |||||||||||||| | || ||||||||||||| |
|
|
| T |
8165927 |
cctcaagattcaacgaatgaactcaatttctcatttccaacaacccggttatc |
8165979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0208 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0208
Description:
Target: scaffold0208; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 276 - 330
Target Start/End: Complemental strand, 383 - 329
Alignment:
| Q |
276 |
cctcaagattcaacaaacaaactcaatttctcacctacatcaacccggttatcag |
330 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || |||| || ||||||||| |
|
|
| T |
383 |
cctcaagattcaacaaacaaactcaatttctcatctccatcgtcctggttatcag |
329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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