View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18323_high_4 (Length: 597)
Name: NF18323_high_4
Description: NF18323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18323_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 469; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 6 - 577
Target Start/End: Original strand, 28498907 - 28499476
Alignment:
| Q |
6 |
aactcatgttgtataatcatcatacatattcaaaattgtgtttgattgtcatgttgagtatgtgtgctcttttgttctagggtgataaaactatttattt |
105 |
Q |
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| T |
28498907 |
aactcatgttgtataatcatcaaacatattcaaaattgtgtttgattgtcatgttgagtatgtgtgctcttttgttctagggtgataaaactatttattt |
28499006 |
T |
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| Q |
106 |
tgatgaattgattttataaaattgattgaaataaagaaactagagtgtcaattaatttatgtaaaatacaatgtaaaagtggattgaacnnnnnnntatc |
205 |
Q |
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| T |
28499007 |
tgatgaattgattttataa--ttgattgaaataaagaaactagaatgtaaattaatttatgtaaaatacaatgtaaaagtggattgaacaaaaaaatatc |
28499104 |
T |
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| Q |
206 |
acgtcagagatcaatttaaagacaaacactttaaatttttgcataaattagaacgagtcaaaacaatatttttgaggctcaacaaaatcgtggtgtcact |
305 |
Q |
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| T |
28499105 |
acgtgatagatcaatttaaagacaaacattttaaatttttgcataaattagaacgagtcaatacaatatttttgaggctcaacaaaatcgtggtgtcact |
28499204 |
T |
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| Q |
306 |
gttattttgtcaaattgaatttgaatataagtatatacactaattctatatgcaaaattaattctattggagaatatctagctctatcaaaataaattct |
405 |
Q |
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| T |
28499205 |
cttattttattaaattgaatttgaatataagtatatacactaattctatatgcaaaattaattctattggagaatatctagctctatcaaaataaattct |
28499304 |
T |
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| Q |
406 |
acttgtctgaaatcaatttgggctcgttacctaatgatt-atattcatgactacaattgcagggtctcatggaggcagagaattcatattcatacgtgta |
504 |
Q |
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| T |
28499305 |
acttgtctgaaatcaatttggactcgttacctaatgattaatattcatgac-acagttgcagggtctcatggaggcagaaaattcatattcatacgtgta |
28499403 |
T |
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| Q |
505 |
taaaagaacatttgttatgaattgccattctcttaaatagaaattattatctccaagatattgcgtaaattat |
577 |
Q |
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| T |
28499404 |
taaaagaacatttgtgatgaattgccattctcttaaatagaaattattatctccaagatattgcgtaaattat |
28499476 |
T |
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