View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18323_high_7 (Length: 492)

Name: NF18323_high_7
Description: NF18323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18323_high_7
NF18323_high_7
[»] chr4 (18 HSPs)
chr4 (18-492)||(8035987-8036458)
chr4 (18-488)||(8410721-8411197)
chr4 (18-483)||(8041401-8041866)
chr4 (18-488)||(9138585-9139058)
chr4 (35-198)||(8354614-8354777)
chr4 (295-488)||(8416374-8416567)
chr4 (19-194)||(8416620-8416798)
chr4 (19-198)||(8359152-8359325)
chr4 (396-488)||(8356480-8356572)
chr4 (396-488)||(8403670-8403762)
chr4 (23-198)||(43144466-43144641)
chr4 (396-488)||(43144839-43144931)
chr4 (35-198)||(8356119-8356282)
chr4 (396-465)||(8359526-8359595)
chr4 (19-95)||(9576996-9577072)
chr4 (130-194)||(8403967-8404031)
chr4 (35-105)||(8404062-8404132)
chr4 (295-348)||(8359437-8359490)
[»] chr2 (3 HSPs)
chr2 (18-356)||(33084019-33084349)
chr2 (24-129)||(24845317-24845422)
chr2 (122-194)||(24844593-24844665)
[»] chr7 (4 HSPs)
chr7 (396-488)||(5476209-5476301)
chr7 (42-109)||(5476606-5476673)
chr7 (295-368)||(5476320-5476393)
chr7 (130-198)||(5476502-5476570)


Alignment Details
Target: chr4 (Bit Score: 441; Significance: 0; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 18 - 492
Target Start/End: Original strand, 8035987 - 8036458
Alignment:
Q  18 gaaaggggtcagcacaatgattgtgagttgcaacaaacttgaaatatttaagatgcaaggttcttaatgcaggcaagtgaagagattttggacactttgt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8035987 gaaaggggtcagcacaatgattgtgagttgcaacaaacttgaaatatttaagatgcaaggttcttaatgcaggcaagtgaagagattttggacactttgt 8036086  T
Q  118 atctgtgttattcctactataacaaagatcaagaaatgtcaaagagtgagagccaaagattaaagggagtaactcagattttggacacttcccatacccg 217  Q
    ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  8036087 atccgtgttattcctactataacaaagatcaagaaatgtcaaagaatgagagccaaagattaaagggagtaactcagattttggacacttcccataccca 8036186  T
Q  218 ttaattttcaaagagagtagtggatttatattaatgagtttatatagctcttcttcaccaccacgcatccaagcattaatagtaagattaagcagtgaat 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8036187 ttaattttcaaagagagtagtggatttatattaatgagtttatatagctcttcttcaccaccacgcatccaagcattaatagtaagattaagcagtgaat 8036286  T
Q  318 atgagtgatctctattggacagaacccaagacataaattgctcaaaactatcatttgaagatgtatctccagaccgagtatatgtgagagtagtgacgcg 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||   | |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  8036287 atgagtgatctctattggacagaacccaagacataaattgctcaaa---agcatttgaagatgtaactccagaccgagtatatgtgagagtagtgacgcg 8036383  T
Q  418 tttgcaaagatccttccaccgtttagacaagatacaagtctgaacagcatcttgtgcttcaagaaacctcagtat 492  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8036384 tttgcaaagatccttccaccgtttagacaagatacaagtctgaacagcatcttgtgcttcaagaaacctcagtat 8036458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 18 - 488
Target Start/End: Complemental strand, 8411197 - 8410721
Alignment:
Q  18 gaaaggggtcagcacaatgattgtgagttgcaacaaacttgaaatatttaagatgcaaggttcttaatgcaggcaagtgaagagattttggacactttgt 117  Q
    |||| |||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||     
T  8411197 gaaaagggtcagcacaatgattgtgagttgcaacaaagttgaaaaatttaagatgcaaggttcttaatgcaggtaagtgaagagattttggacactttgc 8411098  T
Q  118 atctgtgttattcctactataa---caaagatcaagaaatgtcaaagagtgagagccaaagattaaagggagtaactcagattttggacacttcccatac 214  Q
    ||    || || ||||||||||   ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  8411097 atgcccgtcatacctactataataacaaagctcaagaaatgtcaaagagtgagagccaaagattaaagggagtaactcagattttggacactttccatac 8410998  T
Q  215 ccgttaattttcaaagagagtagtggatttatattaatgagtttatatagctcttcttcaccaccacgc---atccaagcattaatagtaagattaagca 311  Q
    || |||||||||||||||||||||||||||||||||||||||||  |||||||||||||  || |   |   ||||||||||||||||||||||||||||    
T  8410997 ccattaattttcaaagagagtagtggatttatattaatgagtttgcatagctcttcttcttcatcttcctgtatccaagcattaatagtaagattaagca 8410898  T
Q  312 gtgaatatgagtgatctctattggacagaacccaagacataaattgctcaaaactatcatttgaagatgtatctccagaccgagtatatgtgagagtagt 411  Q
    |||||||||||||||||||| |||||||||||||||||||||| | || |||||| ||||  ||| |||||| |  |||| |||||||||||||||||||    
T  8410897 gtgaatatgagtgatctctactggacagaacccaagacataaagttcttaaaactttcatccgaatatgtatgtatagacggagtatatgtgagagtagt 8410798  T
Q  412 gacgcgtttgcaaagatccttccaccgtttagacaagatacaagtctgaacagcatcttgtgcttcaagaaacctca 488  Q
    || |||||||||||||||||||||||||||||||||||| |||||| ||||||||||| ||||||||||||| ||||    
T  8410797 gaggcgtttgcaaagatccttccaccgtttagacaagatgcaagtccgaacagcatctcgtgcttcaagaaaactca 8410721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 18 - 483
Target Start/End: Original strand, 8041401 - 8041866
Alignment:
Q  18 gaaaggggtcagcacaatgattgtgagttgcaacaaacttgaaatatttaagatgcaaggttcttaatgcaggcaagtgaagagattttggacactttgt 117  Q
    |||| ||||||||||||||||||||||||||||||||  ||||| | |||||||||||||||||||||||||| |||||||||||||||||||||||||     
T  8041401 gaaaagggtcagcacaatgattgtgagttgcaacaaatctgaaaaaattaagatgcaaggttcttaatgcaggtaagtgaagagattttggacactttgc 8041500  T
Q  118 atctgtgttattcctactataa---caaagatcaagaaatgtcaaagagtgagagccaaagattaaagggagtaactcagattttggacacttcccatac 214  Q
    ||    || || || |||||||   ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | ||||||    
T  8041501 atacccgtcataccaactataataacaaagctcaagaaatgtcaaagagtgagagccaaagattaaaggaagtaactcagattttggacaccttccatac 8041600  T
Q  215 ccgttaattttcaaagagagtagtggatttatattaatgagtttatatagctcttcttcaccaccacgcatccaagcattaatagtaagattaagcagtg 314  Q
    || |||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||  |     | |||||||||| ||||||||||||||| || |    
T  8041601 ccattaattttcaaagagagtagcggatttatattaatgagtttacatagctcttcatcttcct---gtatccaagcatcaatagtaagattaagtaggg 8041697  T
Q  315 aatatgagtgatctctattggacagaacccaagacataaattgctcaaaactatcatttgaagatgtatctccagaccgagtatatgtgagagtagtgac 414  Q
    ||||||||||||||||| |||||||||||||||||||||||| || | | || ||||  |||||||||  |  |||| ||||||||||||||||||||||    
T  8041698 aatatgagtgatctctactggacagaacccaagacataaatttcttagatctttcatacgaagatgtaagtggagacggagtatatgtgagagtagtgac 8041797  T
Q  415 gcgtttgcaaagatccttccaccgtttagacaagatacaagtctgaacagcatcttgtgcttcaagaaa 483  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||    
T  8041798 gcgtttgcaaagatccttccaccgtttagacaagatacaagtccgaacagcatctcgtgcttcaagaaa 8041866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 18 - 488
Target Start/End: Original strand, 9138585 - 9139058
Alignment:
Q  18 gaaaggggtcagcacaatgattgtgagttgcaacaaacttgaaatatttaagatgcaaggttcttaatgcaggcaagtgaagagattttggacactttgt 117  Q
    |||||||||||||||| |||| ||||||||||||||| | |||  ||| ||||||||||||||||||||| || | |||||||||||||||||||||||     
T  9138585 gaaaggggtcagcacagtgatcgtgagttgcaacaaagtggaaccattgaagatgcaaggttcttaatgctggtatgtgaagagattttggacactttgc 9138684  T
Q  118 atctgtgttattcctactataacaaagatcaagaaatgtcaaagagtgagagccaaagattaaagggagtaa---ctcagattttggacacttcccatac 214  Q
    ||    ||| ||| ||| |||| |||| |||||||||||||||||| |||||||||||| ||||||||||||   ||||||||||||||||||  |||||    
T  9138685 atacccgtttttcatacaataagaaaggtcaagaaatgtcaaagagcgagagccaaagagtaaagggagtaataactcagattttggacactttgcatac 9138784  T
Q  215 ccgttaattttcaaagagagtagtggatttatattaatgagtttatatagctcttcttcaccaccacgcatccaagcattaatagtaagattaagcagtg 314  Q
    ||   ||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||  | ||   ||| |||||||  |||||||||||||| ||||    
T  9138785 ccaaaaattttcaaagagagaagtggatttattttaatgagtttatataggtcttcttccgctccgtccatacaagcatggatagtaagattaagtagtg 9138884  T
Q  315 aatatgagtgatctctattggacagaacccaagacataaattgctcaaaactatcatttgaagatgtatctccagaccgagtatatgtgagagtagtgac 414  Q
    || |||||||||||||| | |||||||||||||||||||||||||||||||||||||| |||||||||  |  |  | |||||||||||||||||||||     
T  9138885 aagatgagtgatctctactcgacagaacccaagacataaattgctcaaaactatcattcgaagatgtaagtaaaaccggagtatatgtgagagtagtgag 9138984  T
Q  415 gcgtttgcaaagatccttccaccgtttagacaagatacaagtctgaacagcatcttgtgcttcaagaaacctca 488  Q
    || ||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| ||||    
T  9138985 gcatttgcaaagatccttccaccgtttagacaagatgcaagtccgaacagcatcttgtgcttcaagaaaactca 9139058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 35 - 198
Target Start/End: Original strand, 8354614 - 8354777
Alignment:
Q  35 tgattgtgagttgcaacaaacttgaaatatttaagatgcaaggttcttaatgcaggcaagtgaagagattttggacactttgtatctgtgttattcctac 134  Q
    |||| ||||||||||||||| |||| | |||| |||||||||||||||| ||||||||||||||||||||||||||||||||| || |||||||||||||    
T  8354614 tgatggtgagttgcaacaaagttgacacatttgagatgcaaggttcttactgcaggcaagtgaagagattttggacactttgtctccgtgttattcctac 8354713  T
Q  135 tataacaaagatcaagaaatgtcaaagagtgagagccaaagattaaagggagtaactcagattt 198  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  8354714 tataacaaagatcaagaaatgtcaaagagtgagagccaaagattaaagggagtaactcggattt 8354777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 295 - 488
Target Start/End: Complemental strand, 8416567 - 8416374
Alignment:
Q  295 aatagtaagattaagcagtgaatatgagtgatctctattggacagaacccaagacataaattgctcaaaactatcatttgaagatgtatctccagaccga 394  Q
    |||||| |||||||| || |||||||| ||||||||| |||||||||||||||||||||||| || | | | || ||  |||||||||  |  |||| ||    
T  8416567 aatagttagattaagtagggaatatgaatgatctctaatggacagaacccaagacataaatttcttatacccataatacgaagatgtaaatagagacgga 8416468  T
Q  395 gtatatgtgagagtagtgacgcgtttgcaaagatccttccaccgtttagacaagatacaagtctgaacagcatcttgtgcttcaagaaacctca 488  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||    
T  8416467 gtatatgtgagagtagtgaggcgtttgcaaagatccttccaccgtttagacaagatacaagtccgaacagcatctcgtgcttcaagaaaactca 8416374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 19 - 194
Target Start/End: Complemental strand, 8416798 - 8416620
Alignment:
Q  19 aaaggggtcagcacaatgattgtgagttgcaacaaacttgaaatatttaagatgcaaggttcttaatgcaggcaagtgaagagattttggacactttgta 118  Q
    |||||| ||||||||||||| ||||||||||||||| || ||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| | |    
T  8416798 aaagggctcagcacaatgatcgtgagttgcaacaaagttaaaaaatttaagatgcaaggttcttaatgcaggtaagtgaagagattttggacacttcgca 8416699  T
Q  119 tctgtgttattcctact---ataacaaagatcaagaaatgtcaaagagtgagagccaaagattaaagggagtaactcag 194  Q
    |    || || ||||||   |||| |||| ||||||||||||||||||||||||||||||||||| ||||||| |||||    
T  8416698 taccagtcatacctactataataagaaagctcaagaaatgtcaaagagtgagagccaaagattaacgggagtatctcag 8416620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 19 - 198
Target Start/End: Original strand, 8359152 - 8359325
Alignment:
Q  19 aaaggggtcagcacaatgattgtgagttgcaacaaacttgaaatatttaagatgcaaggttcttaatgcaggcaagtgaagagattttggacactttgta 118  Q
    ||||||||||||||| |||| |||||||| |||||| |||||  |||||||||||||||||||||||||||||| ||||||||||||||||||||| | |    
T  8359152 aaaggggtcagcacagtgatagtgagttgtaacaaagttgaagcatttaagatgcaaggttcttaatgcaggcaggtgaagagattttggacacttcgca 8359251  T
Q  119 tctgtgttattcctactataacaaagatcaagaaatgtcaaagagtgagagccaaagattaaagggagtaactcagattt 198  Q
    |    ||||     |||| || |||| ||||||||||||||||||||||||||||||||||||||||| |||||| ||||    
T  8359252 tacccgtta-----acta-aagaaagctcaagaaatgtcaaagagtgagagccaaagattaaagggaggaactcatattt 8359325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 396 - 488
Target Start/End: Original strand, 8356480 - 8356572
Alignment:
Q  396 tatatgtgagagtagtgacgcgtttgcaaagatccttccaccgtttagacaagatacaagtctgaacagcatcttgtgcttcaagaaacctca 488  Q
    ||||||||||| ||| || ||||||||||||||||||||| |||||||||||||| |||||| ||||| |||||| |||||||||||| ||||    
T  8356480 tatatgtgagaatagggaggcgtttgcaaagatccttccatcgtttagacaagatgcaagtccgaacaacatcttctgcttcaagaaaactca 8356572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 396 - 488
Target Start/End: Complemental strand, 8403762 - 8403670
Alignment:
Q  396 tatatgtgagagtagtgacgcgtttgcaaagatccttccaccgtttagacaagatacaagtctgaacagcatcttgtgcttcaagaaacctca 488  Q
    |||||| |||||||||||  |||||||||||||||||||| |||||||||||||| |||||| ||||||| ||| ||||||||||||| ||||    
T  8403762 tatatgcgagagtagtgagacgtttgcaaagatccttccatcgtttagacaagatgcaagtccgaacagcgtctcgtgcttcaagaaaactca 8403670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 23 - 198
Target Start/End: Original strand, 43144466 - 43144641
Alignment:
Q  23 gggtcagcacaatgattgtgagttgcaacaaacttgaaatatttaagatgcaaggttcttaatgcaggcaagtgaagagattttggacactttgtatctg 122  Q
    ||||||||| | |||| ||| ||||||||||| |||| |||||| |||| ||| |||||||||||||||||| | |||||||||||||||  || | |      
T  43144466 gggtcagcatagtgatggtgtgttgcaacaaagttgacatatttgagatacaaagttcttaatgcaggcaagcgtagagattttggacacactgcaaccc 43144565  T
Q  123 tgttattcctactataacaaagatcaagaaatgtcaaagagtgagagccaaagattaaagggagtaactcagattt 198  Q
     |  ||||| || |||  |||| |  ||||||||||||||||||||| |  |||||||||||||||| ||||||||    
T  43144566 cgaaattccgaccatatgaaagcttgagaaatgtcaaagagtgagagactgagattaaagggagtaaatcagattt 43144641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 396 - 488
Target Start/End: Original strand, 43144839 - 43144931
Alignment:
Q  396 tatatgtgagagtagtgacgcgtttgcaaagatccttccaccgtttagacaagatacaagtctgaacagcatcttgtgcttcaagaaacctca 488  Q
    ||||| ||||||||||||| |||||||||||||||||||| || ||||||||||| |||||  ||||| | ||| ||||||||||||| ||||    
T  43144839 tatatttgagagtagtgacacgtttgcaaagatccttccatcgcttagacaagatgcaagttcgaacaacgtctcgtgcttcaagaaaactca 43144931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 35 - 198
Target Start/End: Original strand, 8356119 - 8356282
Alignment:
Q  35 tgattgtgagttgcaacaaacttgaaatatttaagatgcaaggttcttaatgcaggcaagtgaagagattttggacactttgtatctgtgttattcctac 134  Q
    |||| ||||||||||||||| |||| | |||  |||||||| |||||||||||||| || ||||||||||||||||||  |  | |   |  || |||||    
T  8356119 tgatggtgagttgcaacaaagttgacacattcgagatgcaaagttcttaatgcaggaaattgaagagattttggacacactacaacccagccatgcctac 8356218  T
Q  135 tataacaaagatcaagaaatgtcaaagagtgagagccaaagattaaagggagtaactcagattt 198  Q
    ||||  |||| |  |||||||||||||||||||||    |||||||||||||||||||||||||    
T  8356219 tatatgaaagcttgagaaatgtcaaagagtgagaggtcgagattaaagggagtaactcagattt 8356282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 396 - 465
Target Start/End: Original strand, 8359526 - 8359595
Alignment:
Q  396 tatatgtgagagtagtgacgcgtttgcaaagatccttccaccgtttagacaagatacaagtctgaacagc 465  Q
    ||||||||||||||| ||  |||||||||||||||||||| |||||||||||||| |||||  |||||||    
T  8359526 tatatgtgagagtagggagacgtttgcaaagatccttccatcgtttagacaagatgcaagttcgaacagc 8359595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 19 - 95
Target Start/End: Original strand, 9576996 - 9577072
Alignment:
Q  19 aaaggggtcagcacaatgattgtgagttgcaacaaacttgaaatatttaagatgcaaggttcttaatgcaggcaagt 95  Q
    |||||| |||||||| ||| ||| ||||||| |||| | ||| |||| |||||||||||||||||||||||||||||    
T  9576996 aaagggatcagcacagtgactgttagttgcagcaaagtagaagtattcaagatgcaaggttcttaatgcaggcaagt 9577072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 130 - 194
Target Start/End: Complemental strand, 8404031 - 8403967
Alignment:
Q  130 cctactataacaaagatcaagaaatgtcaaagagtgagagccaaagattaaagggagtaactcag 194  Q
    ||||| |||| |||| ||||||||||||||||||||||||   ||||||||||| ||||||||||    
T  8404031 cctacgataagaaagctcaagaaatgtcaaagagtgagaggttaagattaaaggtagtaactcag 8403967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 35 - 105
Target Start/End: Complemental strand, 8404132 - 8404062
Alignment:
Q  35 tgattgtgagttgcaacaaacttgaaatatttaagatgcaaggttcttaatgcaggcaagtgaagagattt 105  Q
    |||| ||||||||||||||| ||||  |||| |||||| || ||||||||| ||||||| |||| ||||||    
T  8404132 tgatcgtgagttgcaacaaagttgacgtattcaagatgtaaagttcttaatacaggcaaatgaaaagattt 8404062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 295 - 348
Target Start/End: Original strand, 8359437 - 8359490
Alignment:
Q  295 aatagtaagattaagcagtgaatatgagtgatctctattggacagaacccaaga 348  Q
    ||||||||||||||| || ||| |||||||||||||| | ||| ||||||||||    
T  8359437 aatagtaagattaagtagggaacatgagtgatctctactagaccgaacccaaga 8359490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 139; Significance: 2e-72; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 18 - 356
Target Start/End: Complemental strand, 33084349 - 33084019
Alignment:
Q  18 gaaaggggtcagcacaatgattgtgagttgcaacaaacttgaaatatttaagatgcaaggttcttaatgcaggcaagtgaagagattttggacactttgt 117  Q
    |||||||||||||||||||||||||||||||||  || |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||     
T  33084349 gaaaggggtcagcacaatgattgtgagttgcaaagaagttgaaaaattgaagatgcaaggttcttaatgcaggcaagtgaagagattttggacactttg- 33084251  T
Q  118 atctgtgttattcctactataacaaagatcaagaaatgtcaaagagtgagagccaaagattaaaggga----gtaactcagattttgga---cacttccc 210  Q
             |||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||   |||  ||     
T  33084250 --------cattcctaccataagaaagctcaagaaatgtcaaagagtgagagccaaagattaaagggagtacgtaactcagattttggacagcacgaccg 33084159  T
Q  211 atacccgttaattttcaaagagagtagtggatttatattaatgagtttatatagctcttcttcaccaccacgcatccaagcattaatagtaagattaagc 310  Q
    |  ||| ||||||||||||||||| ||||||||||| |||| ||||||| |||| ||| |||  |||    |||||||| ||| || ||||||||||||     
T  33084158 acgcccattaattttcaaagagagaagtggatttattttaacgagtttacataggtctcctt--cca----gcatccaaccatcaacagtaagattaagt 33084065  T
Q  311 agtgaatatgagtgatctctattggacagaacccaagacataaatt 356  Q
    |||||| | |||||||||||| ||||||||| ||||||||||||||    
T  33084064 agtgaacaggagtgatctctactggacagaatccaagacataaatt 33084019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 24 - 129
Target Start/End: Complemental strand, 24845422 - 24845317
Alignment:
Q  24 ggtcagcacaatgattgtgagttgcaacaaacttgaaatatttaagatgcaaggttcttaatgcaggcaagtgaagagattttggacactttgtatctgt 123  Q
    |||||||| | |||| ||||||||| ||||| |||| | |||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| ||    
T  24845422 ggtcagcatagtgatggtgagttgctacaaagttgacacatttgagatgcaaggttcttactgcaggcaagtgaagagattttggacactttgtatccgt 24845323  T
Q  124 gttatt 129  Q
    ||||||    
T  24845322 gttatt 24845317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 122 - 194
Target Start/End: Complemental strand, 24844665 - 24844593
Alignment:
Q  122 gtgttattcctactataacaaagatcaagaaatgtcaaagagtgagagccaaagattaaagggagtaactcag 194  Q
    |||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| ||| |||||||||||    
T  24844665 gtgttattcctactataagaaagatcaagaaatgtcaaagaatgagagccaaagattgaagagagtaactcag 24844593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 2e-28; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 396 - 488
Target Start/End: Complemental strand, 5476301 - 5476209
Alignment:
Q  396 tatatgtgagagtagtgacgcgtttgcaaagatccttccaccgtttagacaagatacaagtctgaacagcatcttgtgcttcaagaaacctca 488  Q
    ||||||||||||||||||  |||||||||||||||||||| |||||||||||||| |||||| ||||||||||| ||||||||||||| ||||    
T  5476301 tatatgtgagagtagtgagacgtttgcaaagatccttccatcgtttagacaagatgcaagtccgaacagcatctcgtgcttcaagaaaactca 5476209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 42 - 109
Target Start/End: Complemental strand, 5476673 - 5476606
Alignment:
Q  42 gagttgcaacaaacttgaaatatttaagatgcaaggttcttaatgcaggcaagtgaagagattttgga 109  Q
    ||||||||||||| ||||  |||| |||||| || ||||||||||||||||| || ||||||||||||    
T  5476673 gagttgcaacaaagttgacgtattcaagatgtaaagttcttaatgcaggcaaatgtagagattttgga 5476606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 295 - 368
Target Start/End: Complemental strand, 5476393 - 5476320
Alignment:
Q  295 aatagtaagattaagcagtgaatatgagtgatctctattggacagaacccaagacataaattgctcaaaactat 368  Q
    ||||||||||||   ||||||| |||| ||||||||| | ||||||||||||||| |||| | || ||||||||    
T  5476393 aatagtaagattccacagtgaacatgattgatctctactagacagaacccaagacttaaagttcttaaaactat 5476320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 130 - 198
Target Start/End: Complemental strand, 5476570 - 5476502
Alignment:
Q  130 cctactataacaaagatcaagaaatgtcaaagagtgagagccaaagattaaagggagtaactcagattt 198  Q
    ||||| |||| |||| ||||| |||||||| |||| |||| | || |||||||||||||| ||||||||    
T  5476570 cctacgataagaaagctcaaggaatgtcaaggagttagaggctaaaattaaagggagtaaatcagattt 5476502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University