View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18323_high_8 (Length: 486)
Name: NF18323_high_8
Description: NF18323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18323_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 171 - 448
Target Start/End: Complemental strand, 13511096 - 13510823
Alignment:
| Q |
171 |
aaattaatgcaatttccatgtatcattatagaggaaacttgattactgaatatgtgaaattgaagcaaggttaactgatgccctcaatcaagcaaataac |
270 |
Q |
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| T |
13511096 |
aaattaatgcaatttccatgtatcattatagaggaaacttgattactgaatatgtgaaattgaagcaaggttaactgatgccctcaatcaagcaaataac |
13510997 |
T |
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| Q |
271 |
ctnnnnnnnttactacatcccatttgtagaatattactaaattgaagcgacatagtgaagcggcagcctgcttcaatgtcaacgcaagcgatgacagtgg |
370 |
Q |
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| T |
13510996 |
ctaaaaaaattactacatcccatttgtagaatattgctaaattgaagcgacaaagtgaagcggcagtctgcttcaatgtcaacgcaagtgatgacagtgg |
13510897 |
T |
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| Q |
371 |
cggcgagggttccaccaacatggttgtatatatgtcttgctctttcttcaattttttcacacttattgcggtaatcac |
448 |
Q |
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| T |
13510896 |
cggtgagggttccaccaacatggttgtatatatgtcttgc----tcttcaattttttcacacttattgcggtaatcac |
13510823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 171 - 448
Target Start/End: Complemental strand, 13600627 - 13600354
Alignment:
| Q |
171 |
aaattaatgcaatttccatgtatcattatagaggaaacttgattactgaatatgtgaaattgaagcaaggttaactgatgccctcaatcaagcaaataac |
270 |
Q |
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| T |
13600627 |
aaattaatgcaatttccatgtatcattatagaggaaacttgattactgaatatgtgaaattgaagcaaggttaactgatgccctcaatcaagcaaataac |
13600528 |
T |
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| Q |
271 |
ctnnnnnnnttactacatcccatttgtagaatattactaaattgaagcgacatagtgaagcggcagcctgcttcaatgtcaacgcaagcgatgacagtgg |
370 |
Q |
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| T |
13600527 |
ctaaaaaaattactacatcccatttgtagaatattgctaaattgaagcgacaaagtgaagcggcagtctgcttcaatgtcaacgcaagtgatgacagtgg |
13600428 |
T |
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| Q |
371 |
cggcgagggttccaccaacatggttgtatatatgtcttgctctttcttcaattttttcacacttattgcggtaatcac |
448 |
Q |
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| T |
13600427 |
cggtgagggttccaccaacatggttgtatatatgtcttgc----tcttcaattttttcacacttattgcggtaatcac |
13600354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 17 - 114
Target Start/End: Complemental strand, 13511247 - 13511150
Alignment:
| Q |
17 |
aacaaggtggtttttagaacatttgatgtcttcggtagaactaaaggttcgggttcgtaaatagaatttctcatcaattgaattattaaaattcagtg |
114 |
Q |
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| T |
13511247 |
aacaaggtggtttttagaacatctgatgtcttcggtagaacttaaggttcgggttcgtaaacagaatttctcatcaattgaattattaaaattcagtg |
13511150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 17 - 114
Target Start/End: Complemental strand, 13600778 - 13600681
Alignment:
| Q |
17 |
aacaaggtggtttttagaacatttgatgtcttcggtagaactaaaggttcgggttcgtaaatagaatttctcatcaattgaattattaaaattcagtg |
114 |
Q |
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| T |
13600778 |
aacaaggtggtttttagaacatctgatgtcttcggtagaacttaaggttcgggttcgtaaacagaatttctcatcaattgaattattaaaattcagtg |
13600681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 171 - 317
Target Start/End: Original strand, 17585404 - 17585551
Alignment:
| Q |
171 |
aaattaatgcaatttccatgtatcattatagaggaaacttgattactgaatatgtgaaattgaa-gcaaggttaactgatgccctcaatcaagcaaataa |
269 |
Q |
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|||||||||||||| ||| |||||||||| |||||||||||||||||||||| ||| |||| |||||||||||||||||||||||||||| |||||| |
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| T |
17585404 |
aaattaatgcaattcccaattatcattatatgagaaacttgattactgaatatgtcaaactgaaagcaaggttaactgatgccctcaatcaagaaaataa |
17585503 |
T |
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| Q |
270 |
cctnnnnnnnttactacatcccatttgtagaatattactaaattgaag |
317 |
Q |
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| T |
17585504 |
cctacaaacattaccacatcccattcatagaatattgttaaattgaag |
17585551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 171 - 244
Target Start/End: Original strand, 26702757 - 26702822
Alignment:
| Q |
171 |
aaattaatgcaatttccatgtatcattatagaggaaacttgattactgaatatgtgaaattgaagcaaggttaa |
244 |
Q |
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||||||| |||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |
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| T |
26702757 |
aaattaaagcaatttccatgtatcattatacaggaaactt--------aatatgtgaaattgaagcaaggttaa |
26702822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 171 - 244
Target Start/End: Original strand, 26972490 - 26972555
Alignment:
| Q |
171 |
aaattaatgcaatttccatgtatcattatagaggaaacttgattactgaatatgtgaaattgaagcaaggttaa |
244 |
Q |
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||||||| |||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |
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| T |
26972490 |
aaattaaagcaatttccatgtatcattatacaggaaactt--------aatatgtgaaattgaagcaaggttaa |
26972555 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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