View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18323_high_9 (Length: 483)
Name: NF18323_high_9
Description: NF18323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18323_high_9 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 12 - 465
Target Start/End: Complemental strand, 45693112 - 45692638
Alignment:
| Q |
12 |
tcatcagctgtagaattaaatgctagtggaacagcaggactaatggaaaccgtggaatcggcttcagcctctaagttaaaggatc--------------- |
96 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45693112 |
tcatcagctgtagaattaaatgctagtggaacagcaggactaatggaaaccgtggaatcggcttcagcctctaagttaaaggatcaaatgcctaagttaa |
45693013 |
T |
|
| Q |
97 |
------caatgccaaatgtgaactcacaagttatgctaaacaacaagggatgtagctcaacaaatcaaatgtcgatccaggtcagtttgtacgaagatat |
190 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45693012 |
aggatccaatgccaaatgtgaactcacaagttatgctaaacaacaagggatgtagctcaacaaatcaaatgtcgatccaggtcagtttgtacgaagatat |
45692913 |
T |
|
| Q |
191 |
ctccttttctgtttttgtgcatannnnnnn-gttatgttccaacctcaagtccactgaaccgnnnnnnngaagtattgtccactttgggctggagtattt |
289 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| |
|
|
| T |
45692912 |
ctccttttctgtttttgtgcatattttttttgttatgttccaacctcaagtccactgaaccgtttttttgaagtattgtccgctttgggctggagtattt |
45692813 |
T |
|
| Q |
290 |
aataaaacaaatttaaaggaacttctgatttgttagactaaaaaatatataggaactttaaatatcattgtgaataagtgtatgaagattgaaacctgta |
389 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
45692812 |
aataaaacaaatttaaaggaacttctgatttgttagactaaaaaatatgtaggaactttaaatatcattgtgaat-agtgtatgaagattgaaacctgta |
45692714 |
T |
|
| Q |
390 |
ttgtttgttcttgacaaagtgttatgacagggaactcaatacaattttcagataaaagttgtagataaatgcacac |
465 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
45692713 |
ttgtttgttcttgacaaagtgttatgacagggaactcaatacaattttcagataaaagttgtagacaaatgcacac |
45692638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University