View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18323_low_13 (Length: 457)
Name: NF18323_low_13
Description: NF18323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18323_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 401; Significance: 0; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 18 - 446
Target Start/End: Complemental strand, 24649099 - 24648670
Alignment:
| Q |
18 |
tctgtcattgtcgtactactattacactaagggatacaaaatacgcgttgaaggaactattggtacaaagaaatattgcttcaaagaaacagaatatagt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24649099 |
tctgtcattgtcgtactactattacactaagggatacaaaatacgcgttgaaggaactattggtacaaagaaatattgcttcaaagaaacagaatatagt |
24649000 |
T |
|
| Q |
118 |
aacagacaatacacgatctctctttaccctattctttgttgtttgtgatcttgatcttgtttctttccnnnnnnn-gtaaaatatacacttttcttctct |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
24648999 |
aacagacaatacacgatctctctttaccctattctttgttgtttgtgatcttgatcttgtttctttccaaaaaaaagtaaaatatacacttttcttctct |
24648900 |
T |
|
| Q |
217 |
ttttgttttctccaatcaaaataaaatgattacgcataagtactataaagtttattttattctgatgggtttgttggtgcctttagctgcaatggaaata |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24648899 |
ttttgttttctccaatcaaaataaaatgattacgcataagtactataaagtttattttattctgatgggtttgttggtgcctttagctgcaatggaaata |
24648800 |
T |
|
| Q |
317 |
tcaaggtttaaacactaacccattccaaccaccacccataacaatgctactgtttttgacatctctatttagtcatgcagttgcattcacagctgacatg |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24648799 |
tcaaggtttaaacactaacccattccaaccaccacccataacaatgctactgtttttgacatctctatttagtcatgcagttgcattcacagctgacatg |
24648700 |
T |
|
| Q |
417 |
agcttcccaactactatatatatctttcat |
446 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
24648699 |
agcttcccaactactatatatatctttcat |
24648670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 229 - 445
Target Start/End: Complemental strand, 24693485 - 24693273
Alignment:
| Q |
229 |
caatcaaaataaaatgattacgcataagtactataaagtttattttattctgatgggtttgttggtgcctttagctgcaatggaaatatcaaggtttaaa |
328 |
Q |
| |
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||||||||| | ||||||||||||||| ||| |||| |||||||||| ||||||||||||||||| ||||||| ||| || ||| ||| |||||| |
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| T |
24693485 |
caatcaaaacagaatgattacgcataattac---aaagcttattttattttgatgggtttgttggtgaatttagcttcaact-aagtatgaagctttaaa |
24693390 |
T |
|
| Q |
329 |
cactaacccattccaaccaccacccataacaatgctactgtttttgacatctctatttagtcatgcagttgcattcacagctgacatgagcttcccaact |
428 |
Q |
| |
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|||||||||||| |||||| | | ||| ||| | ||||||||||||||||||| | |||| |||||| ||| ||||||||| |||||||| ||| || |
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| T |
24693389 |
cactaacccatttaaaccactatctccaactatgttgctgtttttgacatctctatgttgtcacgcagtttcatccacagctgatatgagcttgccagct |
24693290 |
T |
|
| Q |
429 |
actatatatatctttca |
445 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
24693289 |
actatatatatctttca |
24693273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 229 - 445
Target Start/End: Complemental strand, 24642116 - 24641904
Alignment:
| Q |
229 |
caatcaaaataaaatgattacgcataagtactataaagtttattttattctgatgggtttgttggtgcctttagctgcaatggaaatatcaaggtttaaa |
328 |
Q |
| |
|
||||||||| | ||||||||||| ||| ||| |||| ||| ||| |||||||||||||||||||| |||||||| ||| || ||| ||| |||||| |
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|
| T |
24642116 |
caatcaaaacagaatgattacgcgtaattac---aaagcttacttttttctgatgggtttgttggtgactttagcttcaact-aagtatgaagctttaaa |
24642021 |
T |
|
| Q |
329 |
cactaacccattccaaccaccacccataacaatgctactgtttttgacatctctatttagtcatgcagttgcattcacagctgacatgagcttcccaact |
428 |
Q |
| |
|
||| ||||| || ||||||| | || ||||||| | ||||||||||||||||||| | |||| |||||| ||| ||||||||| |||||||| || || |
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| T |
24642020 |
caccaacccgtttcaaccactatccccaacaatgttgctgtttttgacatctctatgttgtcacgcagtttcatccacagctgatatgagcttgtcagct |
24641921 |
T |
|
| Q |
429 |
actatatatatctttca |
445 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
24641920 |
actatatatatctttca |
24641904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 268 - 445
Target Start/End: Original strand, 24733206 - 24733388
Alignment:
| Q |
268 |
ttattttattctgatgggtttgttggtgcctttagctgcaatggaaatatcaaggtttaaacacta------acccattccaaccaccacccataacaat |
361 |
Q |
| |
|
|||||||||||| ||||| |||||||| |||||||||||| | || ||| ||| |||||| |||| ||||||| |||||| || || ||| | |
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| T |
24733206 |
ttattttattctaatgggcatgttggtggctttagctgcaacg-aagtatgaagctttaaaaactagtactaacccatttcaaccatcatccccaacttt |
24733304 |
T |
|
| Q |
362 |
gctactgtttttgacatctctatttagtcatgcagttgcattcacagctgacatgagcttcccaactactatatatatctttca |
445 |
Q |
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| | ||||||||||||||||||| | |||| ||||| ||| ||||||||| |||||||| ||| ||||||||||||||||||| |
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| T |
24733305 |
gttgctgtttttgacatctctatgttgtcacacagtttcatccacagctgatatgagcttgccagctactatatatatctttca |
24733388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 229 - 337
Target Start/End: Complemental strand, 24694571 - 24694467
Alignment:
| Q |
229 |
caatcaaaataaaatgattacgcataagtactataaagtttattttattctgatgggtttgttggtgcctttagctgcaatggaaatatcaaggtttaaa |
328 |
Q |
| |
|
||||||||| | ||||||||||| ||| ||| |||| |||||||||||||||||||||||||||| |||||||| ||| || ||| ||| |||||| |
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|
| T |
24694571 |
caatcaaaacagaatgattacgcgtaattac---aaagcttattttattctgatgggtttgttggtgtctttagcttcaa-ctaagtatgaagctttaaa |
24694476 |
T |
|
| Q |
329 |
cactaaccc |
337 |
Q |
| |
|
||||||||| |
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| T |
24694475 |
cactaaccc |
24694467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 366 - 433
Target Start/End: Complemental strand, 24634415 - 24634348
Alignment:
| Q |
366 |
ctgtttttgacatctctatttagtcatgcagttgcattcacagctgacatgagcttcccaactactat |
433 |
Q |
| |
|
|||||||| || ||| ||||| |||||||||||||| || |||||||||||||| ||||||||||| |
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|
| T |
24634415 |
ctgttttttacttctgtattttgtcatgcagttgcaaccatggctgacatgagcttaccaactactat |
24634348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 315 - 433
Target Start/End: Complemental strand, 24687737 - 24687619
Alignment:
| Q |
315 |
tatcaaggtttaaacactaacccattccaaccaccacccataacaatgctactgtttttgacatctctatttagtcatgcagttgcattcacagctgaca |
414 |
Q |
| |
|
|||||||||||||||||||| || ||||||| | ||||| ||| || | || |||||||||||| | ||| |||||| ||| ||| |||||||||| |
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|
| T |
24687737 |
tatcaaggtttaaacactaatcccttccaacaatcaccccaaaccttgttgctatttttgacatctatcttttgtcatgtcgtttcatccacagctgact |
24687638 |
T |
|
| Q |
415 |
tgagcttcccaactactat |
433 |
Q |
| |
|
||| ||| |||| |||||| |
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|
| T |
24687637 |
tgaccttaccaagtactat |
24687619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 404 - 445
Target Start/End: Complemental strand, 24720860 - 24720819
Alignment:
| Q |
404 |
cacagctgacatgagcttcccaactactatatatatctttca |
445 |
Q |
| |
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||||||||| |||||||| ||| ||||||||||||||||||| |
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|
| T |
24720860 |
cacagctgatatgagcttgccagctactatatatatctttca |
24720819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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