View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18323_low_16 (Length: 427)
Name: NF18323_low_16
Description: NF18323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18323_low_16 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 372; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 18 - 413
Target Start/End: Complemental strand, 37960700 - 37960305
Alignment:
| Q |
18 |
aaaagcagaggagggtgatagcaaaagtgatgaaggtgattgtgttgatcttgatgatcactgctactttgtgtttcttgcagattgtcgtgatagcggt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37960700 |
aaaagcagaggagggtgatagcaaaagtgatgaaggtgattgtgttgatcttgatgatcactgctactttgtgtttcttgcagattgtcgtgatagcggt |
37960601 |
T |
|
| Q |
118 |
gaattgtcattaccaaaaacttattttggaaattgtcttgcatcttatactgtggctgtaaagagagatgagttaattggaaaaaatgggattgtttcgg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37960600 |
gaattgtcattaccaaaaacttattttggaaattgtcttgcatcttataccgtggctgtaaagagagatgagttaattggaaaaaatgggattgtttcgg |
37960501 |
T |
|
| Q |
218 |
cttcaattggtattgaaaagaagataagacattttaagagtcatgctttgttaggagctgaaacattgatgtctgattatagggaaatgtcaaaacctgg |
317 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37960500 |
cttcaattggtatcgaaaagaagataagacatttaaagagtcatgctttgttaggagctgaaacattgatgtctgattatagggaaatgtcaaaacctgg |
37960401 |
T |
|
| Q |
318 |
taagtctttaactgtggttgctggttcaccgaaattggctgtttatgatacagattttgggtgggggaagcctaagaaatctgatgcagttcatct |
413 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
37960400 |
taagtctgtaactgtggttgctggttcaccgaaattggctgtttatgagacagattttgggtgggggaagcctaagaaatctgatgctgttcatct |
37960305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 296 - 413
Target Start/End: Complemental strand, 37954613 - 37954496
Alignment:
| Q |
296 |
atagggaaatgtcaaaacctggtaagtctttaactgtggttgctggttcaccgaaattggctgtttatgatacagattttgggtgggggaagcctaagaa |
395 |
Q |
| |
|
||||||||||||||||||||||||||||| | | |||| |||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
37954613 |
atagggaaatgtcaaaacctggtaagtctgttaatgtgattgctggttcaccgaatttggctgtttatgagacagattttggatgggggaagcctaagaa |
37954514 |
T |
|
| Q |
396 |
atctgatgcagttcatct |
413 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
37954513 |
atctgatgcagttcatct |
37954496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 95 - 407
Target Start/End: Original strand, 37907422 - 37907731
Alignment:
| Q |
95 |
ttgcagattgtcgtgatagcggtgaattgtcattaccaaaaacttattttggaaattgtcttgcatcttatactgtggctgtaaagagagatgagttaat |
194 |
Q |
| |
|
|||||||||||||||| | |||||| |||||| | ||| ||||||||||||||||| |||| ||||||| |||| |||||| || | ||||||| | |
|
|
| T |
37907422 |
ttgcagattgtcgtgaccgttctgaattttcattagctaaatcttattttggaaattgtgttgcctcttataacgtggttgtaaaaaggggtgagttagt |
37907521 |
T |
|
| Q |
195 |
tggaaaaaatgggattgtttcggcttcaattggtattgaaaagaagataagacattttaagagtcatgctttgttaggagctgaaacattgatgtctgat |
294 |
Q |
| |
|
|| |||| |||| |||||| | || || || |||| |||||||||||||| ||||||||||| |||||||||||| ||||||||| ||||| ||||| |
|
|
| T |
37907522 |
tgaaaaagatggtattgttgcagc---aaatgctatttaaaagaagataagagattttaagagtgatgctttgttagaagctgaaacgttgatacctgat |
37907618 |
T |
|
| Q |
295 |
tatagggaaatgtcaaaacctggtaagtctttaactgtggttgctggttcaccgaaattggctgtttatgatacagattttgggtgggggaagcctaaga |
394 |
Q |
| |
|
|||| |||| | | |||||||||||| || || ||||||||||| ||||| ||| | | ||||| ||| || |||||||||||||| || || |||| |
|
|
| T |
37907619 |
tatatggaattattaaaacctggtaactcatttgtagtggttgctgggtcacctaaacttgatgtttgtgagactgattttgggtggggaaaaccaaaga |
37907718 |
T |
|
| Q |
395 |
aatctgatgcagt |
407 |
Q |
| |
|
||||||||||||| |
|
|
| T |
37907719 |
aatctgatgcagt |
37907731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 89 - 403
Target Start/End: Original strand, 37915566 - 37915880
Alignment:
| Q |
89 |
tgtttcttgcagattgtcgtgatagcggtgaattgtcattaccaaaaacttattttggaaattgtcttgcatcttatactgtggctgtaaagagagatga |
188 |
Q |
| |
|
||||| ||||||||||||||||| | ||||||| |||||| | ||||||||||||||||| |||||||| ||||||||||| | |||||| || | ||| |
|
|
| T |
37915566 |
tgttttttgcagattgtcgtgatcgtcgtgaattttcattatcgaaaacttattttggaaactgtcttgcttcttatactgtagttgtaaataggggtga |
37915665 |
T |
|
| Q |
189 |
gttaattggaaaaaatgggattgtttcggcttcaattggtattgaaaagaagataagacattttaagagtcatgctttgttaggagctgaaacattgatg |
288 |
Q |
| |
|
|||| |||||||| |||| ||| || ||| ||| || ||||||| |||||||||| |||| |||||| |||| ||||| |||| |||||| |||||| |
|
|
| T |
37915666 |
gttagttggaaaagatggtattcttgtggcggcaaatgctattgaacggaagataagagatttcaagagtgatgccttgttgggagttgaaacgttgatg |
37915765 |
T |
|
| Q |
289 |
tctgattatagggaaatgtcaaaacctggtaagtctttaactgtggttgctggttcaccgaaattggctgtttatgatacagattttgggtgggggaagc |
388 |
Q |
| |
|
|||||||||||||||| |||||| ||||| ||| | | ||||| |||| || || ||| | | ||||||||| || |||||||||||||| || | |
|
|
| T |
37915766 |
cctgattatagggaaataataaaaccaggtaactctgttaaaatggtttctgggtcgcctaaacttgatgtttatgagactgattttgggtggggaaaac |
37915865 |
T |
|
| Q |
389 |
ctaagaaatctgatg |
403 |
Q |
| |
|
| |||||||| |||| |
|
|
| T |
37915866 |
caaagaaatccgatg |
37915880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 69 - 413
Target Start/End: Original strand, 3783688 - 3784035
Alignment:
| Q |
69 |
tgatgatcactgctactttgtgtttcttgcagattgtcgtgatagcggtgaattgtcattaccaaaaacttattttggaaattgtcttgcatcttatact |
168 |
Q |
| |
|
|||||||| |||||||| || |||| |||||||||||||||||| |||| | |||||||| |||| ||||||||||||||||||||| | | | | |
|
|
| T |
3783688 |
tgatgatctatgctacttggtatttcatgcagattgtcgtgatagtcctgaaatttcattacccaaaaattattttggaaattgtcttgccagtaaaatt |
3783787 |
T |
|
| Q |
169 |
gtggctgtaaagagagatgagttaattggaaaaaatgggattgtttcggcttcaattggtattgaaaagaagataagacattttaagag---tcatgctt |
265 |
Q |
| |
|
|||| ||||||||| | ||||||| |||||| ||||||||||||| ||||| ||| |||||| |||| |||||||||| |||| ||||| | |||||| |
|
|
| T |
3783788 |
gtggttgtaaagagggctgagttagttggaacaaatgggattgttgcggctgcaaatggtatcgaaaggaagataagagatttcaagagtgataatgctt |
3783887 |
T |
|
| Q |
266 |
tgttaggagctgaaacattgatgtctgattatagggaaatgtcaaaacctggtaagtctttaactgtggttgctggttcaccgaaattggctgtttatga |
365 |
Q |
| |
|
||||||| || || | || |||||| |||| ||| | |||||||||||||||||| | | ||||||| ||||| ||||| | ||||||||| |
|
|
| T |
3783888 |
tgttaggtcctaaatggtggacttctgatcatagtgaattatcaaaacctggtaagtctgttgtaggaattgctggctcacctaaatttgatgtttatga |
3783987 |
T |
|
| Q |
366 |
tacagattttgggtgggggaagcctaagaaatctgatgcagttcatct |
413 |
Q |
| |
|
|| || || ||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
3783988 |
gactgacttcgggtgggggaagcctaaaaaatctgatgcagttcatct |
3784035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University