View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18323_low_17 (Length: 414)
Name: NF18323_low_17
Description: NF18323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18323_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 11 - 399
Target Start/End: Original strand, 8176235 - 8176630
Alignment:
| Q |
11 |
caaaggaatatcaaaacgcatcat------aaagacggaggtgcacatgtctcaactattctctgcccaaagtcataagttgttatcaaggttgtctcct |
104 |
Q |
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| T |
8176235 |
caaaggaatatcaaaacgcatcatctccataaacacggaggtgcacttttctcaactatgctctgcccaaagtcataagttgttatcaagcttgtctcct |
8176334 |
T |
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| Q |
105 |
tctgaagcttcttatgtcataaagacaataagggcttggggcaattgtttcggaatgggcctcaacccacatcatagatccaatgcatgactacacatta |
204 |
Q |
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| T |
8176335 |
tctgaagcttcttatgtcataaagacaataagggcttggggcaattgtttcggaatgggcctcaacccacatcacaaatccaatgcatgactacacatta |
8176434 |
T |
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| Q |
205 |
atcgataatccgtgtcattcaagaaaacatagaagacttcatgcgtgcctcactgcacagaagcgcatctcatccaacctgcaccactcatatgatctca |
304 |
Q |
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| T |
8176435 |
accgataatccacgtcattcaagaaaacatagaagatttcatgcgtgcctcactgcacagaagcgcatctcatccaacctgcaccactcatatgatctca |
8176534 |
T |
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| Q |
305 |
aacaatctcctgcatatctcgtcg-ggcattacatagttagttacatttgtgctatgctatataagtgtggctccacgccacacttgagatacgat |
399 |
Q |
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| T |
8176535 |
aacaatctcctgcatatctcgtcgccgcattacatagttagttacagttgtgctatgctatataagtgtggctccacgccacacttgaggtacgat |
8176630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 109 - 145
Target Start/End: Complemental strand, 11748516 - 11748480
Alignment:
| Q |
109 |
aagcttcttatgtcataaagacaataagggcttgggg |
145 |
Q |
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| T |
11748516 |
aagcttcttacgtcataaagacgataagggcttgggg |
11748480 |
T |
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