View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18323_low_18 (Length: 400)
Name: NF18323_low_18
Description: NF18323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18323_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 144; Significance: 1e-75; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 210 - 395
Target Start/End: Complemental strand, 8173341 - 8173150
Alignment:
| Q |
210 |
ttaatggtcaacttctcatgtgcgttgttcaaataagcataatctataaa-taatcactttaaatacatatatgatgccacatatcacttagatgagaaa |
308 |
Q |
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| T |
8173341 |
ttaatggtcaacttctcatgtgcgttgttcaaataagcataatctaaaaaataacccctttaaatacatatatgatgccacatatcacttagatgagaaa |
8173242 |
T |
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| Q |
309 |
tcaaaatattgtcgctcattgttcaaatattttttctcaatctattctcacacttctatttg-----tttgttatggcatcatgagcctcaa |
395 |
Q |
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| T |
8173241 |
tcaaaatattatcgctcatcgttcaaatattttttctcaatctattctcacacttctatttgtttaatttgttatggcatcatgagcctcaa |
8173150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 51 - 211
Target Start/End: Complemental strand, 8174878 - 8174717
Alignment:
| Q |
51 |
tcaattatggatga-ttggcttggatgactcttacaaagttgatggatcaaggttaacaagcctagacttattgaaactgagttgttcttgcttgttgcg |
149 |
Q |
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| T |
8174878 |
tcaattatggataaattggcttggatgactcttgcaaagttgatggatcaaggttaacaagcctagacttattgaaactgagttgttcttgcttgttgcg |
8174779 |
T |
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| Q |
150 |
aacaatgattatagaaaagttgtctagttaggagtgaattttgttaagtgctttgcttattt |
211 |
Q |
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| T |
8174778 |
aacaatgattatagaaaagttgtctatttaggagtgaattttgttaagtgctttgcttattt |
8174717 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 8176081 - 8176040
Alignment:
| Q |
1 |
gcttcccgtgagactttttgcgaccttccggtgggttttgac |
42 |
Q |
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| T |
8176081 |
gcttcccgtgagactttttgcgacctaccggtgggttttgac |
8176040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 268
Target Start/End: Original strand, 48775276 - 48775334
Alignment:
| Q |
210 |
ttaatggtcaacttctcatgtgcgttgttcaaataagcataatctataaataatcactt |
268 |
Q |
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| T |
48775276 |
ttaatggtcaacttctcgtttgtgttgttcgaataagctgaatctaaaaataatcactt |
48775334 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 217 - 269
Target Start/End: Original strand, 30534543 - 30534595
Alignment:
| Q |
217 |
tcaacttctcatgtgcgttgttcaaataagcataatctataaataatcacttt |
269 |
Q |
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| T |
30534543 |
tcaacttctcatttgcgttattcaaataagcataatctaaaaataatcacttt |
30534595 |
T |
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