View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18323_low_19 (Length: 366)
Name: NF18323_low_19
Description: NF18323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18323_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 114; Significance: 9e-58; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 219 - 351
Target Start/End: Complemental strand, 30472172 - 30472039
Alignment:
| Q |
219 |
tgtgagccaaatcttcaaccaccattgcaaatctccaaacgagatccaaacacttatcttctgctactcgaacg-aaacccgtccacaaaaaccacaaat |
317 |
Q |
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| T |
30472172 |
tgtgagccaaatcttcaaccaccattgcaaatctccaaacgagatccaaacacttatcttccactactcgaacgaaaacccgtccacaaaaaccacaaat |
30472073 |
T |
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| Q |
318 |
cgatggatggaggttttatatttaaggatggatg |
351 |
Q |
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| T |
30472072 |
cgatggatggtggttttatatttaaggatggatg |
30472039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 9 - 121
Target Start/End: Complemental strand, 30472382 - 30472270
Alignment:
| Q |
9 |
agcagagatcaacaacacaaaaacaagtaaaaggtgacgtagataggcggaacatccaacagaaaatccatacacttcggacatcaaatcactgacaaaa |
108 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
30472382 |
agcagagaccaacaacacaaaaacaagtaaaaggtgacgtagataggcggaacacccaacagaaaatccatacacttcggacatcaaatcaccgacaaaa |
30472283 |
T |
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| Q |
109 |
atatcactcaact |
121 |
Q |
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||||||||||||| |
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| T |
30472282 |
atatcactcaact |
30472270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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