View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18323_low_29 (Length: 282)
Name: NF18323_low_29
Description: NF18323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18323_low_29 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 18 - 186
Target Start/End: Complemental strand, 52249325 - 52249157
Alignment:
| Q |
18 |
acaaaatcatgtattcttctaagtgcatttgatttcattagtacaaatgttactatttaccttaacaaaatccttcttaatgttgctaagtttaattctt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52249325 |
acaaaatcatgtattcttctaagtgcatttgatttcattagtacaaatgttactatttaccttaacaaaatccttcttaatgttgctaagtttaattctt |
52249226 |
T |
|
| Q |
118 |
aactatctggcacaaagtctcgcatttcctatttagttgcatttcttttgacaggaaagtgatgctatt |
186 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52249225 |
aactatctggcacaaagtctcgcatttcctatttagttgcatttcttttgacaggaaagtgatgctatt |
52249157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 90 - 181
Target Start/End: Original strand, 12574680 - 12574771
Alignment:
| Q |
90 |
cttcttaatgttgctaagtttaattcttaactatctggcacaaagtctcgcatttcctatttagttgcatttcttttgacaggaaagtgatg |
181 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||||| | |||||||||||||||||||| |||||| |
|
|
| T |
12574680 |
cttcttaaggttgctaagtttaattcttaactatctagcacaaagtctagcatttcctatttggctgcatttcttttgacaggaaggtgatg |
12574771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 93 - 181
Target Start/End: Original strand, 12586885 - 12586973
Alignment:
| Q |
93 |
cttaatgttgctaagtttaattcttaactatctggcacaaagtctcgcatttcctatttagttgcatttcttttgacaggaaagtgatg |
181 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| |||| |||| | ||||||||||||| || |||||||||| |||| |||||| |
|
|
| T |
12586885 |
cttaaggttgctaagtttaattcttaactatctgtcacactgtctagtatttcctatttagccacacttcttttgactggaaggtgatg |
12586973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 89 - 174
Target Start/End: Complemental strand, 20009088 - 20009003
Alignment:
| Q |
89 |
ccttcttaatgttgctaagtttaattcttaactatctggcacaaagtctcgcatttcctatttagttgcatttcttttgacaggaa |
174 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| ||| |||||| |||| |||||||||||||||| ||||||||||||||||||| |
|
|
| T |
20009088 |
ccttcttaatgttgacaagtttaattcttaactctcttgcacaatgtctagcatttcctatttagtagcatttcttttgacaggaa |
20009003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 140 - 181
Target Start/End: Complemental strand, 20028446 - 20028405
Alignment:
| Q |
140 |
catttcctatttagttgcatttcttttgacaggaaagtgatg |
181 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| |||||| |
|
|
| T |
20028446 |
catttcctatttagtttcatttcttttgacaggaaggtgatg |
20028405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University