View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18323_low_30 (Length: 251)

Name: NF18323_low_30
Description: NF18323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18323_low_30
NF18323_low_30
[»] chr7 (8 HSPs)
chr7 (13-233)||(33399512-33399732)
chr7 (13-233)||(33395628-33395845)
chr7 (130-233)||(33441945-33442048)
chr7 (130-233)||(33452165-33452268)
chr7 (13-106)||(33395529-33395622)
chr7 (13-106)||(33399413-33399506)
chr7 (50-101)||(33399357-33399408)
chr7 (50-84)||(33395473-33395507)


Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 13 - 233
Target Start/End: Original strand, 33399512 - 33399732
Alignment:
Q  13 gagaccaagttaactctgatgtctgcacgctagcagcccatggtgcatttgaaggcggtgctgcttcaggggccggcacaggtgagggtgagggggaggc 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33399512 gagaccaagttaactctgatgtctgcacgctagcagcccatggtgcatttgaaggcggtgctgcttcaggggccggcacaggtgagggtgagggggaggc 33399611  T
Q  113 tgaaggtgaggagggtgctggataccaaccatcttgttttggcaaaacatttatgaaaagcttttgtccattttcgcagtgattggcaacacctgaaatg 212  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33399612 tgaaggtgaggagggtgctggataccaaccatcttgttttggtaaaacatttatgaaaagcttttgtccattttcgcagtgattggcaacacctgaaatg 33399711  T
Q  213 taccatcttctcccaaaggtt 233  Q
    ||||||||||||||| |||||    
T  33399712 taccatcttctcccataggtt 33399732  T

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Target: chr7; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 13 - 233
Target Start/End: Original strand, 33395628 - 33395845
Alignment:
Q  13 gagaccaagttaactctgatgtctgcacgctagcagcccatggtgcatttgaaggcggtgctgcttcaggggccggcacaggtgagggtgagggggaggc 112  Q
    ||||| ||||||  ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| | |||||||||||||||||| ||||||||    
T  33395628 gagacgaagttatttctgatgtctgcacgctagcagcccatggcgcatttgaaggtggtgctgcttcaggagtcggcacaggtgagggtgacggggaggc 33395727  T
Q  113 tgaaggtgaggagggtgctggataccaaccatcttgttttggcaaaacatttatgaaaagcttttgtccattttcgcagtgattggcaacacctgaaatg 212  Q
    |||||||   |||||| ||||| ||||||||   |||  ||||   || ||||||||||||||||| |||   | ||||||||  ||| |||||||||||    
T  33395728 tgaaggt---gagggtactggagaccaaccaaactgtggtggctgcacgtttatgaaaagcttttggccaagattgcagtgatgagcagcacctgaaatg 33395824  T
Q  213 taccatcttctcccaaaggtt 233  Q
    ||||||||||| ||| |||||    
T  33395825 taccatcttcttccataggtt 33395845  T

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Target: chr7; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 130 - 233
Target Start/End: Original strand, 33441945 - 33442048
Alignment:
Q  130 ctggataccaaccatcttgttttggcaaaacatttatgaaaagcttttgtccattttcgcagtgattggcaacacctgaaatgtaccatcttctcccaaa 229  Q
    ||||| ||||||||||||||||||||   ||| ||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||| |    
T  33441945 ctggagaccaaccatcttgttttggctgcacagttatgaaaagcttttgtccattttcgcagtgatcggtaacacttgaaatgtaccatcttctcccata 33442044  T
Q  230 ggtt 233  Q
    ||||    
T  33442045 ggtt 33442048  T

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Target: chr7; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 130 - 233
Target Start/End: Original strand, 33452165 - 33452268
Alignment:
Q  130 ctggataccaaccatcttgttttggcaaaacatttatgaaaagcttttgtccattttcgcagtgattggcaacacctgaaatgtaccatcttctcccaaa 229  Q
    ||||| ||||||||||||||||||||   ||| ||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||| |    
T  33452165 ctggagaccaaccatcttgttttggctgcacagttatgaaaagcttttgtccattttcgcagtgatcggtaacacttgaaatgtaccatcttctcccata 33452264  T
Q  230 ggtt 233  Q
    ||||    
T  33452265 ggtt 33452268  T

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Target: chr7; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 13 - 106
Target Start/End: Original strand, 33395529 - 33395622
Alignment:
Q  13 gagaccaagttaactctgatgtctgcacgctagcagcccatggtgcatttgaaggcggtgctgcttcaggggccggcacaggtgagggtgaggg 106  Q
    |||||||||||| ||||||||||||| ||| ||||||||||||||||||||||| ||||||||||||| |||||||   |||||||||||||||    
T  33395529 gagaccaagttatctctgatgtctgcgcgccagcagcccatggtgcatttgaagacggtgctgcttcatgggccggtgtaggtgagggtgaggg 33395622  T

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Target: chr7; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 13 - 106
Target Start/End: Original strand, 33399413 - 33399506
Alignment:
Q  13 gagaccaagttaactctgatgtctgcacgctagcagcccatggtgcatttgaaggcggtgctgcttcaggggccggcacaggtgagggtgaggg 106  Q
    |||||||| ||| |||||||| ||||||||||||| ||||||||||||||||||| ||||| ||||||||||| ||   ||||||||| |||||    
T  33399413 gagaccaatttatctctgatgcctgcacgctagcaacccatggtgcatttgaaggaggtgcggcttcaggggctggtgtaggtgagggcgaggg 33399506  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 101
Target Start/End: Original strand, 33399357 - 33399408
Alignment:
Q  50 ccatggtgcatttgaaggcggtgctgcttcaggggccggcacaggtgagggt 101  Q
    |||||||||||||||||| |||||||||| |||||||||   ||||||||||    
T  33399357 ccatggtgcatttgaaggtggtgctgcttgaggggccggtgtaggtgagggt 33399408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 84
Target Start/End: Original strand, 33395473 - 33395507
Alignment:
Q  50 ccatggtgcatttgaaggcggtgctgcttcagggg 84  Q
    ||||||||||||||||||||||||| |||||||||    
T  33395473 ccatggtgcatttgaaggcggtgctacttcagggg 33395507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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