View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18323_low_35 (Length: 237)
Name: NF18323_low_35
Description: NF18323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18323_low_35 |
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| [»] chr3 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 51270913 - 51271149
Alignment:
| Q |
1 |
aattattttaccttggcccttcctgcaaggtcataattgaatacgtatattaaatgaaattaatctaaaataaaatcattgtttattgaaataatagggt |
100 |
Q |
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| T |
51270913 |
aattattttaccttggcccttcctgcaaggtcataattgaatacgtatattaaatgaaattaatctaaaataaaatcattgtttattgaaataatagggt |
51271012 |
T |
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| Q |
101 |
tggtcggtttagaataccactggatggaagtccatatggaacattagacgcagcattagacccaaatgaacatgggaaaggcatggacatgtgcagcata |
200 |
Q |
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| T |
51271013 |
tggtcggtttagaataccactggatggaagtccatatggaacattagacgcagcattagacccaaatgaacatgggaaaggcatggacatgtgcagcata |
51271112 |
T |
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| Q |
201 |
aaccctaattatctagggttgaagtacagatatgcct |
237 |
Q |
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| T |
51271113 |
aaccctaattatctagggttgaagtacagatatgcct |
51271149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 50 - 237
Target Start/End: Original strand, 23309060 - 23309242
Alignment:
| Q |
50 |
ttaaatgaaattaatctaaaataaaatcattgtttattgaaataatagggttggtcggtttagaataccactggatggaagtccatatggaacattagac |
149 |
Q |
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| T |
23309060 |
ttaaatgaaattaatctaaa-----atcattgtttattgaaataatagggttggtcggttcagaataccactagatggaagtccatatggaacattagaa |
23309154 |
T |
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| Q |
150 |
gcagcattagacccaaatgaacatgggaaaggcatggacatgtgcagcataaaccctaattatctagggttgaagtacagatatgcct |
237 |
Q |
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| T |
23309155 |
gcagaattagacccaaatgaacatgggaaaggcatggacatgtgcagcataaaccctaattatttagggttgaagtacagatatgcct |
23309242 |
T |
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