View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18323_low_36 (Length: 232)
Name: NF18323_low_36
Description: NF18323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18323_low_36 |
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Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 20 - 219
Target Start/End: Complemental strand, 2489982 - 2489783
Alignment:
| Q |
20 |
gcagcgaggacaagaatacgatcctctgatttcgaggtaagtccatcccaattggacatgaattcattctttattttccgcatggcttcatgttccccaa |
119 |
Q |
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| T |
2489982 |
gcagcgaggacaagaatacgatcctctgatttcgaggtaagtccatcccaattggacatgaattcattctttattttccgcatggcttcatgttccccaa |
2489883 |
T |
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| Q |
120 |
ctcttgttcgctgcccaagcatactgtcaacctcatcgacaaatataatagttggggagaccttggctgccagtgtgaataaagctcggacattcttctc |
219 |
Q |
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| T |
2489882 |
ctcttgttcgctgcccaagcatactgtcaacctcatcgacaaatataatagttggggagaccttggctgccagtgtgaataaagctcggacattcttctc |
2489783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 112; Significance: 9e-57; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 65 - 220
Target Start/End: Original strand, 41591049 - 41591204
Alignment:
| Q |
65 |
tcccaattggacatgaattcattctttattttccgcatggcttcatgttccccaactcttgttcgctgcccaagcatactgtcaacctcatcgacaaata |
164 |
Q |
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| T |
41591049 |
tcccaatgggacataaattcattctttattttccgcatggcttcatgctccccaactcttgttcgttgcccaagcatgctatcaacctcatcgacaaata |
41591148 |
T |
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| Q |
165 |
taatagttggggagaccttggctgccagtgtgaataaagctcggacattcttctca |
220 |
Q |
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| T |
41591149 |
taatagttggggagactttggatgcaagtgtgaataaagcgcgaacattcttctca |
41591204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 59 - 216
Target Start/End: Original strand, 11094442 - 11094599
Alignment:
| Q |
59 |
agtccatcccaattggacatgaattcattctttattttccgcatggcttcatgttccccaactcttgttcgctgcccaagcatactgtcaacctcatcga |
158 |
Q |
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||||||||||||| | |||||||||||| || || |||| |||||| |||||||| || ||||| || ||||| || ||||| |||||||| ||||||| |
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| T |
11094442 |
agtccatcccaatgtgtcatgaattcatttttaatcttcctcatggcctcatgttctccgactctagtacgctgaccgagcatgctgtcaacttcatcga |
11094541 |
T |
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| Q |
159 |
caaatataatagttggggagaccttggctgccagtgtgaataaagctcggacattctt |
216 |
Q |
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| T |
11094542 |
cgaatataatagtcggagcaaccttagctgctagcgtgaacaaagctcggacattctt |
11094599 |
T |
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