View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18323_low_39 (Length: 214)
Name: NF18323_low_39
Description: NF18323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18323_low_39 |
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Alignment Details
Target: chr7 (Bit Score: 114; Significance: 5e-58; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 15 - 148
Target Start/End: Complemental strand, 44115167 - 44115034
Alignment:
| Q |
15 |
catcaccaatacacaaaacccattaaccaaattttcttaattcattgacatcattacttcaacaaccatgtaaaagtctcatgttcggtttcaatcagat |
114 |
Q |
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| T |
44115167 |
catcaccaatacacaaaacccattaaccaaattttcctaattcatcgacatcattacttgaacagccatgtaaaagtctcatgttcggtttcaatcagat |
44115068 |
T |
|
| Q |
115 |
cattgtgcaaaaccttgaaacgatcaatgagatc |
148 |
Q |
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| T |
44115067 |
cattgtgcaaaaccttgaaacgatcaatcagatc |
44115034 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 96
Target Start/End: Complemental strand, 26001740 - 26001659
Alignment:
| Q |
15 |
catcaccaatacacaaaacccattaaccaaattttcttaattcattgacatcattacttcaacaaccatgtaaaagtctcat |
96 |
Q |
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|||||||||| | ||| ||||||| ||||||||||||||||||| ||||||| | || ||||||| || ||||||||||| |
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| T |
26001740 |
catcaccaatgcccaatacccattctccaaattttcttaattcatcgacatcagcagttgaacaaccgtgcaaaagtctcat |
26001659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 96
Target Start/End: Original strand, 21037822 - 21037903
Alignment:
| Q |
15 |
catcaccaatacacaaaacccattaaccaaattttcttaattcattgacatcattacttcaacaaccatgtaaaagtctcat |
96 |
Q |
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|||||||||||| ||| ||||||| ||||||||||| ||||||| ||||||| |||| ||||||| || ||| ||||||| |
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| T |
21037822 |
catcaccaatacccaatacccattctccaaattttctcaattcatcgacatcagcacttgaacaaccgtgcaaatgtctcat |
21037903 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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