View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18323_low_5 (Length: 592)
Name: NF18323_low_5
Description: NF18323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18323_low_5 |
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| [»] scaffold0024 (4 HSPs) |
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Alignment Details
Target: scaffold0024 (Bit Score: 134; Significance: 2e-69; HSPs: 4)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 165 - 302
Target Start/End: Original strand, 6204 - 6341
Alignment:
| Q |
165 |
gaagggtacctctaagaacagcaccacaaccaccacattgataaacagaataactagcttgctcatgaagaacattttgacatttgggacacctcaccaa |
264 |
Q |
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| T |
6204 |
gaagggtacctctaagaacagcaccacaaccaccacattgataaatagaataactagcttgctcatgaagaacattttgacatttgggacacctcaccaa |
6303 |
T |
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| Q |
265 |
acgtagcttagctgaatcctccattgctaaactaagag |
302 |
Q |
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| T |
6304 |
acgtagcttagctgaatcctccattgctaaactaagag |
6341 |
T |
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Target: scaffold0024; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 6 - 55
Target Start/End: Original strand, 6050 - 6099
Alignment:
| Q |
6 |
caaaggtaaacaaactgaaaagtaaatccttgattcataatctcgcttct |
55 |
Q |
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| T |
6050 |
caaaggtaaacaaactgaaaattaaatccttgattcataatctcgcttct |
6099 |
T |
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Target: scaffold0024; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 531 - 576
Target Start/End: Original strand, 6580 - 6625
Alignment:
| Q |
531 |
aactgagtggggacaaattttcttctggggtatcttagaactttgt |
576 |
Q |
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| T |
6580 |
aactgagtggggacaaattttcttctggggtatcttagaactttgt |
6625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 378 - 414
Target Start/End: Original strand, 6430 - 6466
Alignment:
| Q |
378 |
caagatatgagaattgaagaactttcaactacacaag |
414 |
Q |
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| T |
6430 |
caagatatgataattgaagaactttcaactacacaag |
6466 |
T |
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Target: chr8 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 518 - 569
Target Start/End: Complemental strand, 9863450 - 9863399
Alignment:
| Q |
518 |
ggtaacagagggaaactgagtggggacaaattttcttctggggtatcttaga |
569 |
Q |
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| T |
9863450 |
ggtaacagagggaaactgagtggggacaaattttcttctggggtatcttaga |
9863399 |
T |
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Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 172 - 252
Target Start/End: Complemental strand, 48386217 - 48386137
Alignment:
| Q |
172 |
acctctaagaacagcaccacaaccaccacattgataaacagaataactagcttgctcatgaagaacattttgacatttggg |
252 |
Q |
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| T |
48386217 |
acctcgaagaacagcaccacagccaccacattgataaacagagtaatcagcgagctcaggaagtagattttcacatttggg |
48386137 |
T |
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