View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18323_low_6 (Length: 558)

Name: NF18323_low_6
Description: NF18323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18323_low_6
NF18323_low_6
[»] chr7 (6 HSPs)
chr7 (64-492)||(44115034-44115462)
chr7 (64-440)||(26001659-26002035)
chr7 (106-179)||(14231474-14231547)
chr7 (106-166)||(1264212-1264272)
chr7 (106-210)||(21712915-21713019)
chr7 (106-210)||(26907218-26907322)
[»] chr3 (5 HSPs)
chr3 (64-440)||(21037527-21037903)
chr3 (64-295)||(38894879-38895111)
chr3 (103-206)||(36155022-36155125)
chr3 (106-166)||(17688950-17689010)
chr3 (106-166)||(31687155-31687215)
[»] chr1 (2 HSPs)
chr1 (61-163)||(19252415-19252517)
chr1 (106-210)||(25226214-25226318)
[»] chr5 (1 HSPs)
chr5 (106-210)||(30443346-30443450)
[»] chr8 (1 HSPs)
chr8 (106-179)||(8163401-8163474)


Alignment Details
Target: chr7 (Bit Score: 381; Significance: 0; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 64 - 492
Target Start/End: Complemental strand, 44115462 - 44115034
Alignment:
Q  64 acatcatcaggcctattggcaacagtactactggggcaaggtgaatcacaactcaaatatatcctttcttcaccaggtatcaaagacataacataattat 163  Q
    |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44115462 acatcatcaggcctattggcaacaatactactgggacaaggtgaatcacaactcaaatatatcctttcttcaccaggtatcaaagacataacataattat 44115363  T
Q  164 taatctcatccacaatcacattcttaggcgtcaaaattgctctatctctgaaaaattctagatcattaatattatgcaaaatagaagggtaaattcactc 263  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  44115362 taatctcatccacaatcacattcttaggcgtcaaaattgctctatctctgaaaaattatagatcattaatattatgcaaaatagaagggtaaattcactc 44115263  T
Q  264 tgcaattgacgcaacatgatcacctgaactacgaataagcaaatcgtcggggatacgtacattaatttcatcatcacatacatccccaacaacaccatca 363  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  |||||||||||||||||||    
T  44115262 tacaattgacgcaacatgatcacctgaactacgaataagcaaatcgtcggggatacgtgcattaatttcatcatcacatgtatccccaacaacaccatca 44115163  T
Q  364 ccaatacacaaaacccattaaccaaattttcttaattcattgacatcattacttcaacaaccatgtaaaagtctcatgttcggtttcaatcagatcattg 463  Q
    ||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||    
T  44115162 ccaatacacaaaacccattaaccaaattttcctaattcatcgacatcattacttgaacagccatgtaaaagtctcatgttcggtttcaatcagatcattg 44115063  T
Q  464 tgcaaaaccttgaaacgatcaatgagatc 492  Q
    ||||||||||||||||||||||| |||||    
T  44115062 tgcaaaaccttgaaacgatcaatcagatc 44115034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 64 - 440
Target Start/End: Complemental strand, 26002035 - 26001659
Alignment:
Q  64 acatcatcaggcctattggcaacagtactactggggcaaggtgaatcacaactcaaatatatcctttcttcaccaggtatcaaagacataacataattat 163  Q
    |||||||||||||| || |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |    
T  26002035 acatcatcaggcctgttagcaacaatactactggggcaaggtgaatcacaactcaaatatgtcctttcttcaccaggtatcaaagacataacataattgt 26001936  T
Q  164 taatctcatccacaatcacattcttaggcgtcaaaattgctctatctctgaaaaattctagatcattaatattatgcaaaatagaagggtaaattcactc 263  Q
    |||| || || ||||||| |||||||||||||||||| ||||||||||| ||||| ||| ||||||| ||||| |||||||||||||||||||| |||||    
T  26001935 taatttcgtcgacaatcaaattcttaggcgtcaaaatagctctatctctaaaaaactctggatcattcatattttgcaaaatagaagggtaaatgcactc 26001836  T
Q  264 tgcaattgacgcaacatgatcacctgaactacgaataagcaaatcgtcggggatacgtacattaatttcatcatcacatacatccccaacaacaccatca 363  Q
    | |||| || ||||||||||||||||||||||  |||||||  |||||||||||| ||||||||||| |||||||||||||||| |||||||||||||||    
T  26001835 tacaatagatgcaacatgatcacctgaactacagataagcaggtcgtcggggatatgtacattaattccatcatcacatacatctccaacaacaccatca 26001736  T
Q  364 ccaatacacaaaacccattaaccaaattttcttaattcattgacatcattacttcaacaaccatgtaaaagtctcat 440  Q
    ||||| | ||| |||||||  ||||||||||||||||||| |||||||  | || ||||||| || |||||||||||    
T  26001735 ccaatgcccaatacccattctccaaattttcttaattcatcgacatcagcagttgaacaaccgtgcaaaagtctcat 26001659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 106 - 179
Target Start/End: Complemental strand, 14231547 - 14231474
Alignment:
Q  106 gaatcacaactcaaatatatcctttcttcaccaggtatcaaagacataacataattattaatctcatccacaat 179  Q
    |||||||||||||||||| |||||||||| || || || | ||||| |||||| ||||||| |||||| |||||    
T  14231547 gaatcacaactcaaatatgtcctttcttcgccgggaatgagagacagaacatagttattaacctcatcaacaat 14231474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 106 - 166
Target Start/End: Complemental strand, 1264272 - 1264212
Alignment:
Q  106 gaatcacaactcaaatatatcctttcttcaccaggtatcaaagacataacataattattaa 166  Q
    |||||||||||||||||| |||||||||| || || || | |||||||||||| |||||||    
T  1264272 gaatcacaactcaaatatgtcctttcttcgccgggaatgagagacataacatagttattaa 1264212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 106 - 210
Target Start/End: Complemental strand, 21713019 - 21712915
Alignment:
Q  106 gaatcacaactcaaatatatcctttcttcaccaggtatcaaagacataacataattattaatctcatccacaatcacattcttaggcgtcaaaattgctc 205  Q
    |||||||||||||||||| || ||||||||||| | || | ||||| |  ||||| |||||||||||| ||| | ||| | ||||| ||||||||  |||    
T  21713019 gaatcacaactcaaatatgtcttttcttcaccaagaatgagagacaaattataatcattaatctcatcaacagtgacaattttaggtgtcaaaataactc 21712920  T
Q  206 tatct 210  Q
    |||||    
T  21712919 tatct 21712915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 106 - 210
Target Start/End: Original strand, 26907218 - 26907322
Alignment:
Q  106 gaatcacaactcaaatatatcctttcttcaccaggtatcaaagacataacataattattaatctcatccacaatcacattcttaggcgtcaaaattgctc 205  Q
    |||||||||||||||||| |||||||||| || || || | ||||| |||||| ||||||| |||||| | |||   ||| ||||| ||||| ||||||     
T  26907218 gaatcacaactcaaatatgtcctttcttcgccgggaatgagagacagaacatagttattaacctcatcaaaaattgtatttttaggagtcaatattgctt 26907317  T
Q  206 tatct 210  Q
    |||||    
T  26907318 tatct 26907322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 233; Significance: 1e-128; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 64 - 440
Target Start/End: Original strand, 21037527 - 21037903
Alignment:
Q  64 acatcatcaggcctattggcaacagtactactggggcaaggtgaatcacaactcaaatatatcctttcttcaccaggtatcaaagacataacataattat 163  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |    
T  21037527 acatcatcaggcctattagcaacagtactactggggcaaggtgaatcacaactcaaatatgtcctttcttcaccgggtatcaaagacataacataattgt 21037626  T
Q  164 taatctcatccacaatcacattcttaggcgtcaaaattgctctatctctgaaaaattctagatcattaatattatgcaaaatagaagggtaaattcactc 263  Q
    |||| || |  ||||||| |||||||||||||||||| ||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||| |||||    
T  21037627 taatttcgttgacaatcaaattcttaggcgtcaaaatagctctatctctaaaaaactctagatcattcatattatgcaaaatagaagggtaaatgcactc 21037726  T
Q  264 tgcaattgacgcaacatgatcacctgaactacgaataagcaaatcgtcggggatacgtacattaatttcatcatcacatacatccccaacaacaccatca 363  Q
    | |||| || ||||||||||||||||||||||| |||||||  |||||||||||| ||||||||||| |||||||||||||||| |||||||| ||||||    
T  21037727 tacaatagatgcaacatgatcacctgaactacggataagcaggtcgtcggggatatgtacattaattccatcatcacatacatctccaacaaccccatca 21037826  T
Q  364 ccaatacacaaaacccattaaccaaattttcttaattcattgacatcattacttcaacaaccatgtaaaagtctcat 440  Q
    ||||||| ||| |||||||  ||||||||||| ||||||| |||||||  |||| ||||||| || ||| |||||||    
T  21037827 ccaatacccaatacccattctccaaattttctcaattcatcgacatcagcacttgaacaaccgtgcaaatgtctcat 21037903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 64 - 295
Target Start/End: Original strand, 38894879 - 38895111
Alignment:
Q  64 acatcatcaggcctattggcaacagtactactggggcaaggtgaatcacaactcaaatatatcctttcttcaccaggtatcaaagacataacataattat 163  Q
    ||||||||||||||||| |||||| ||||| ||||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||||||| |    
T  38894879 acatcatcaggcctattagcaacaatactaatggggcaaggtgaatcacaactcaaatatgtcctctcttcaccgggtatcaaagacataacataattgt 38894978  T
Q  164 taatctcatccacaatcacattcttaggcgtcaaaattgctctatctct-gaaaaattctagatcattaatattatgcaaaatagaagggtaaattcact 262  Q
    |||| || || ||||||| |||||||||||||||||| |||||||||||  ||||| |||  |||||| |||||||||||||||||||||||||| ||||    
T  38894979 taatttcgtcgacaatcaaattcttaggcgtcaaaatagctctatctctaaaaaaactctgaatcattcatattatgcaaaatagaagggtaaatgcact 38895078  T
Q  263 ctgcaattgacgcaacatgatcacctgaactac 295  Q
    || |||| || ||||||||||||| ||||||||    
T  38895079 ctacaatagatgcaacatgatcacttgaactac 38895111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 103 - 206
Target Start/End: Complemental strand, 36155125 - 36155022
Alignment:
Q  103 ggtgaatcacaactcaaatatatcctttcttcaccaggtatcaaagacataacataattattaatctcatccacaatcacattcttaggcgtcaaaattg 202  Q
    |||||||||||||||| ||||||| ||||||||||| | | ||||||||  | ||||| |||||| || || ||||| ||||| || || ||||| || |    
T  36155125 ggtgaatcacaactcagatatatcttttcttcaccatggaccaaagacaacatataatcattaatttcctcaacaatgacatttttgggtgtcaatatgg 36155026  T
Q  203 ctct 206  Q
    ||||    
T  36155025 ctct 36155022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 106 - 166
Target Start/End: Complemental strand, 17689010 - 17688950
Alignment:
Q  106 gaatcacaactcaaatatatcctttcttcaccaggtatcaaagacataacataattattaa 166  Q
    |||||||||||||||||| |||||||||| ||||  || | ||||| |||||| |||||||    
T  17689010 gaatcacaactcaaatatgtcctttcttcgccagaaatgagagacagaacatagttattaa 17688950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 106 - 166
Target Start/End: Complemental strand, 31687215 - 31687155
Alignment:
Q  106 gaatcacaactcaaatatatcctttcttcaccaggtatcaaagacataacataattattaa 166  Q
    |||||||||||||||||| |||||||||| || || || | ||||| |||||| |||||||    
T  31687215 gaatcacaactcaaatatgtcctttcttcgccgggaatgagagacagaacatagttattaa 31687155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 61 - 163
Target Start/End: Original strand, 19252415 - 19252517
Alignment:
Q  61 tggacatcatcaggcctattggcaacagtactactggggcaaggtgaatcacaactcaaatatatcctttcttcaccaggtatcaaagacataacataat 160  Q
    |||||||||||||| ||||| |||||||| || || ||||||| || ||||||||||||||| | | ||||||| |||||||||| ||||||||||||||    
T  19252415 tggacatcatcaggtctatttgcaacagtgctgctcgggcaagatgtatcacaactcaaatacaccttttcttcgccaggtatcatagacataacataat 19252514  T
Q  161 tat 163  Q
    |||    
T  19252515 tat 19252517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 106 - 210
Target Start/End: Complemental strand, 25226318 - 25226214
Alignment:
Q  106 gaatcacaactcaaatatatcctttcttcaccaggtatcaaagacataacataattattaatctcatccacaatcacattcttaggcgtcaaaattgctc 205  Q
    |||||| ||||||||||| ||||||||||||| || || | ||||| |||||| ||||||| |||||| | |||   ||| ||||| ||||| ||||||     
T  25226318 gaatcataactcaaatatgtcctttcttcaccgggaatgagagacagaacatagttattaacctcatcaaaaattgtatttttaggagtcaatattgctt 25226219  T
Q  206 tatct 210  Q
    |||||    
T  25226218 tatct 25226214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 106 - 210
Target Start/End: Original strand, 30443346 - 30443450
Alignment:
Q  106 gaatcacaactcaaatatatcctttcttcaccaggtatcaaagacataacataattattaatctcatccacaatcacattcttaggcgtcaaaattgctc 205  Q
    |||||||||||||||||| |||||||||| || || || | ||||| |||||| ||||||| |||||| |||||   ||| ||||| ||||| ||||||     
T  30443346 gaatcacaactcaaatatgtcctttcttcgccgggaatgagagacaaaacatagttattaacctcatcaacaattgtatttttaggagtcaatattgctt 30443445  T
Q  206 tatct 210  Q
    |||||    
T  30443446 tatct 30443450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 106 - 179
Target Start/End: Complemental strand, 8163474 - 8163401
Alignment:
Q  106 gaatcacaactcaaatatatcctttcttcaccaggtatcaaagacataacataattattaatctcatccacaat 179  Q
    |||||||||||||||||| |||||||||| || |  || | ||||| |||||| ||||||| |||||| |||||    
T  8163474 gaatcacaactcaaatatgtcctttcttcgccggaaatgagagacagaacatagttattaacctcatcaacaat 8163401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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