View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18323_low_7 (Length: 550)
Name: NF18323_low_7
Description: NF18323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18323_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 492; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 18 - 541
Target Start/End: Original strand, 49997023 - 49997546
Alignment:
| Q |
18 |
cttcttatatttgttagtaagcttcaatatgtcatccatgatctcattgtagtgttccttactttttacggctacctgccacaatctaataaaagcatca |
117 |
Q |
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| T |
49997023 |
cttcttatatttgttagtaagcttcaatatgtcatccatgatctcattgtagtgttccttactttttacggctacctgccacaatctagtaaaagcatca |
49997122 |
T |
|
| Q |
118 |
taggctgcaaactgagcgaactctacatcatagttcattccatccatcaaattcgatgacagtaaagcaatcttagcattcttagtccaccgtgtcaaaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49997123 |
taggctgcaaactgagcgaactctacatcatagttcattccatccatcaaattcgatgacagtaaagcaatcttagcattcttagtccaccgtgtcaaaa |
49997222 |
T |
|
| Q |
218 |
ccaaactgcttggaatatgatccacatgctcaaagatcattgcacgaaaaatatgcgaacactgaatgccacaagactcaaaatgtctacacacacaata |
317 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |
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| T |
49997223 |
ccaaattgcttggaatatgatccacatgctcaaagatcattgcacgaaaaatatgcgaacacggaatgccacgagactcaaaatgtctacacacacaata |
49997322 |
T |
|
| Q |
318 |
aaatgttgacttagaagtatcataaacaacttttgtttcaatactgggatggcaatacttggttagcttgaagataaccttcttcccatttaccattcgc |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
49997323 |
aaatgttgacttagaagtatcataaacaacttttgtttcaatattgggatggcaatacttgattagcttgaagataaccttcttcccatttaccattcgc |
49997422 |
T |
|
| Q |
418 |
ttaataacatttaatgcaccagccaatgcaatctgctctttaacttccttaaaaatctctgttgtgtaaatttttgcagcatcattctcaaactcttgaa |
517 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
49997423 |
ttaataacatttaatgcaccagccaatgcaatctgctctttaacttccttaaaaatctctgttgtgtaaatttttgcagaatcattctcaaactcttgaa |
49997522 |
T |
|
| Q |
518 |
gagacgtggtcaacacaggttctg |
541 |
Q |
| |
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| T |
49997523 |
gagacttggtcaacacaggttctg |
49997546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 291 - 538
Target Start/End: Complemental strand, 24803526 - 24803284
Alignment:
| Q |
291 |
agactcaaaatgtctacacacacaataaaatgttgacttagaagtatcataaacaacttttgtttcaatactgggatggcaatacttggttagcttgaag |
390 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |
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| T |
24803526 |
agactcaaaatgtctacacaca--ataaaatgttgacttagaagtatcataaacaacttttgtttcaatattgggatgacaatacttggttagcttgaag |
24803429 |
T |
|
| Q |
391 |
ataaccttcttcccatttaccattcgcttaataacatttaatgcaccagccaatgcaatctgctctttaacttccttaaaaatctctgttgtgtaaattt |
490 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
24803428 |
ataaccttcttcccatttaccattcgcttaataacatttaatgcaccaaccaatacaatctgctctttaact---ttaaaaatctctgttgtgtaaattt |
24803332 |
T |
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| Q |
491 |
ttgcagcatcattctcaaactcttgaagagacgtggtcaacacaggtt |
538 |
Q |
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| T |
24803331 |
ttgcagcatcattctcaaactcttgaagagacgtggtcaacacaggtt |
24803284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 184; Significance: 2e-99; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 310 - 535
Target Start/End: Original strand, 52658261 - 52658482
Alignment:
| Q |
310 |
acacaataaaatgttgacttagaagtatcataaacaacttttgtttcaatactgggatggcaatacttggttagcttgaagataaccttcttcccattta |
409 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
52658261 |
acacaataaaatgttgacttagaagtatcataaacaacttttgtttcaatattgggatggcaatacttggttagcttgaagataaccttctacccattta |
52658360 |
T |
|
| Q |
410 |
ccattcgcttaataacatttaatgcaccagccaatgcaatctgctctttaacttccttaaaaatctctgttgtgtaaatttttgcagcatcattctcaaa |
509 |
Q |
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|||||||||||||||| |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52658361 |
ccattcgcttaataacgtttaatgcaccagccaatacaatctgctctttaact---ttaaaaatctctgttgtgtaaatttttgcagcatcattctcaaa |
52658457 |
T |
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| Q |
510 |
ctcttgaagagacgtggtcaacacag |
535 |
Q |
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|||||||||||| | ||||||||||| |
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| T |
52658458 |
ctcttgaagagatg-ggtcaacacag |
52658482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 454 - 508
Target Start/End: Original strand, 25518166 - 25518220
Alignment:
| Q |
454 |
tctttaacttccttaaaaatctctgttgtgtaaatttttgcagcatcattctcaa |
508 |
Q |
| |
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||||||||||| ||||| ||||||| |||||||||||| ||||||||| |||||| |
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|
| T |
25518166 |
tctttaacttctttaaagatctctgctgtgtaaattttggcagcatcaatctcaa |
25518220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 454 - 508
Target Start/End: Complemental strand, 19720335 - 19720281
Alignment:
| Q |
454 |
tctttaacttccttaaaaatctctgttgtgtaaatttttgcagcatcattctcaa |
508 |
Q |
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||||||||||| ||||| ||||||| |||||||||| | ||||||||| |||||| |
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| T |
19720335 |
tctttaacttctttaaagatctctgctgtgtaaattctggcagcatcaatctcaa |
19720281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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