View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18323_low_9 (Length: 540)
Name: NF18323_low_9
Description: NF18323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18323_low_9 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 478; Significance: 0; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 18 - 519
Target Start/End: Complemental strand, 24649099 - 24648598
Alignment:
| Q |
18 |
tctgtcattgtcgtactactattacactaagggatacaaaatacgcgttgaaggaactattggtacaaagaaatattgcttcaaagaaacagaatatagt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24649099 |
tctgtcattgtcgtactactattacactaagggatacaaaatacgcgttgaaggaactattggtacaaagaaatattgcttcaaagaaacagaatatagt |
24649000 |
T |
|
| Q |
118 |
aacagacaatacacgatctctctttaccctattctttgttgtttgtgatcttgatcttgtttctttccnnnnnnnngtaaaatatacacttttcttctct |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
24648999 |
aacagacaatacacgatctctctttaccctattctttgttgtttgtgatcttgatcttgtttctttccaaaaaaaagtaaaatatacacttttcttctct |
24648900 |
T |
|
| Q |
218 |
ttttgttttctccaatcaaaataaaatgattacgcataagtactataaagtttattttattctgatgggtttgttggtgcctttagctgcaatggaaata |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24648899 |
ttttgttttctccaatcaaaataaaatgattacgcataagtactataaagtttattttattctgatgggtttgttggtgcctttagctgcaatggaaata |
24648800 |
T |
|
| Q |
318 |
tcaaggtttaaacactaacccattccaaccaccacccataacaatgctactgtttttgacatctctatttagtcatgcagttgcattcacagctgacatg |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24648799 |
tcaaggtttaaacactaacccattccaaccaccacccataacaatgctactgtttttgacatctctatttagtcatgcagttgcattcacagctgacatg |
24648700 |
T |
|
| Q |
418 |
agcttcccaactactatatatatctttcatatctccggtgttgttggggtcgacacacttttgtggattatcatctctcagttctcgaattggtgtatca |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24648699 |
agcttcccaactactatatatatctttcatatctccggtgttgttggggtcgacacacttttgtggattatcatctctcagttctcgaattggtgtatca |
24648600 |
T |
|
| Q |
518 |
tc |
519 |
Q |
| |
|
|| |
|
|
| T |
24648599 |
tc |
24648598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 230 - 516
Target Start/End: Complemental strand, 24693485 - 24693203
Alignment:
| Q |
230 |
caatcaaaataaaatgattacgcataagtactataaagtttattttattctgatgggtttgttggtgcctttagctgcaatggaaatatcaaggtttaaa |
329 |
Q |
| |
|
||||||||| | ||||||||||||||| ||| |||| |||||||||| ||||||||||||||||| ||||||| ||| || ||| ||| |||||| |
|
|
| T |
24693485 |
caatcaaaacagaatgattacgcataattac---aaagcttattttattttgatgggtttgttggtgaatttagcttcaact-aagtatgaagctttaaa |
24693390 |
T |
|
| Q |
330 |
cactaacccattccaaccaccacccataacaatgctactgtttttgacatctctatttagtcatgcagttgcattcacagctgacatgagcttcccaact |
429 |
Q |
| |
|
|||||||||||| |||||| | | ||| ||| | ||||||||||||||||||| | |||| |||||| ||| ||||||||| |||||||| ||| || |
|
|
| T |
24693389 |
cactaacccatttaaaccactatctccaactatgttgctgtttttgacatctctatgttgtcacgcagtttcatccacagctgatatgagcttgccagct |
24693290 |
T |
|
| Q |
430 |
actatatatatctttcatatctccggtgttgttggggtcgacacacttttgtggattatcatctctcagttctcgaattggtgtatc |
516 |
Q |
| |
|
||||||||||||||||| | || ||||||||||| || |||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
24693289 |
actatatatatctttcacttttctggtgttgttggatgtgagacacttttgtggattatcctctctcagttctcgaattggtgtatc |
24693203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 269 - 519
Target Start/End: Original strand, 24733206 - 24733461
Alignment:
| Q |
269 |
ttattttattctgatgggtttgttggtgcctttagctgcaatggaaatatcaaggtttaaacacta------acccattccaaccaccacccataacaat |
362 |
Q |
| |
|
|||||||||||| ||||| |||||||| |||||||||||| | || ||| ||| |||||| |||| ||||||| |||||| || || ||| | |
|
|
| T |
24733206 |
ttattttattctaatgggcatgttggtggctttagctgcaacg-aagtatgaagctttaaaaactagtactaacccatttcaaccatcatccccaacttt |
24733304 |
T |
|
| Q |
363 |
gctactgtttttgacatctctatttagtcatgcagttgcattcacagctgacatgagcttcccaactactatatatatctttcatatctccggtgttgtt |
462 |
Q |
| |
|
| | ||||||||||||||||||| | |||| ||||| ||| ||||||||| |||||||| ||| ||||||||||||||||||| || || ||||||||| |
|
|
| T |
24733305 |
gttgctgtttttgacatctctatgttgtcacacagtttcatccacagctgatatgagcttgccagctactatatatatctttcacatttctggtgttgtt |
24733404 |
T |
|
| Q |
463 |
ggggtcgacacacttttgtggattatcatctctcagttctcgaattggtgtatcatc |
519 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| |
|
|
| T |
24733405 |
ggggtcgacacacttttgtggattatcctctctcagttttcgaattggtgtatcatc |
24733461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 230 - 516
Target Start/End: Complemental strand, 24642116 - 24641834
Alignment:
| Q |
230 |
caatcaaaataaaatgattacgcataagtactataaagtttattttattctgatgggtttgttggtgcctttagctgcaatggaaatatcaaggtttaaa |
329 |
Q |
| |
|
||||||||| | ||||||||||| ||| ||| |||| ||| ||| |||||||||||||||||||| |||||||| ||| || ||| ||| |||||| |
|
|
| T |
24642116 |
caatcaaaacagaatgattacgcgtaattac---aaagcttacttttttctgatgggtttgttggtgactttagcttcaact-aagtatgaagctttaaa |
24642021 |
T |
|
| Q |
330 |
cactaacccattccaaccaccacccataacaatgctactgtttttgacatctctatttagtcatgcagttgcattcacagctgacatgagcttcccaact |
429 |
Q |
| |
|
||| ||||| || ||||||| | || ||||||| | ||||||||||||||||||| | |||| |||||| ||| ||||||||| |||||||| || || |
|
|
| T |
24642020 |
caccaacccgtttcaaccactatccccaacaatgttgctgtttttgacatctctatgttgtcacgcagtttcatccacagctgatatgagcttgtcagct |
24641921 |
T |
|
| Q |
430 |
actatatatatctttcatatctccggtgttgttggggtcgacacacttttgtggattatcatctctcagttctcgaattggtgtatc |
516 |
Q |
| |
|
||||||||||||||||| | || ||||||||||| || |||||||||||||| ||| | |||||| ||||||||||||||||| |
|
|
| T |
24641920 |
actatatatatctttcacttttctggtgttgttggatgtgagacacttttgtggataatcctttctcagatctcgaattggtgtatc |
24641834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 230 - 338
Target Start/End: Complemental strand, 24694571 - 24694467
Alignment:
| Q |
230 |
caatcaaaataaaatgattacgcataagtactataaagtttattttattctgatgggtttgttggtgcctttagctgcaatggaaatatcaaggtttaaa |
329 |
Q |
| |
|
||||||||| | ||||||||||| ||| ||| |||| |||||||||||||||||||||||||||| |||||||| ||| || ||| ||| |||||| |
|
|
| T |
24694571 |
caatcaaaacagaatgattacgcgtaattac---aaagcttattttattctgatgggtttgttggtgtctttagcttcaa-ctaagtatgaagctttaaa |
24694476 |
T |
|
| Q |
330 |
cactaaccc |
338 |
Q |
| |
|
||||||||| |
|
|
| T |
24694475 |
cactaaccc |
24694467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 405 - 464
Target Start/End: Complemental strand, 24720860 - 24720801
Alignment:
| Q |
405 |
cacagctgacatgagcttcccaactactatatatatctttcatatctccggtgttgttgg |
464 |
Q |
| |
|
||||||||| |||||||| ||| ||||||||||||||||||| || || ||||||||||| |
|
|
| T |
24720860 |
cacagctgatatgagcttgccagctactatatatatctttcacatttctggtgttgttgg |
24720801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 367 - 434
Target Start/End: Complemental strand, 24634415 - 24634348
Alignment:
| Q |
367 |
ctgtttttgacatctctatttagtcatgcagttgcattcacagctgacatgagcttcccaactactat |
434 |
Q |
| |
|
|||||||| || ||| ||||| |||||||||||||| || |||||||||||||| ||||||||||| |
|
|
| T |
24634415 |
ctgttttttacttctgtattttgtcatgcagttgcaaccatggctgacatgagcttaccaactactat |
24634348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 316 - 434
Target Start/End: Complemental strand, 24687737 - 24687619
Alignment:
| Q |
316 |
tatcaaggtttaaacactaacccattccaaccaccacccataacaatgctactgtttttgacatctctatttagtcatgcagttgcattcacagctgaca |
415 |
Q |
| |
|
|||||||||||||||||||| || ||||||| | ||||| ||| || | || |||||||||||| | ||| |||||| ||| ||| |||||||||| |
|
|
| T |
24687737 |
tatcaaggtttaaacactaatcccttccaacaatcaccccaaaccttgttgctatttttgacatctatcttttgtcatgtcgtttcatccacagctgact |
24687638 |
T |
|
| Q |
416 |
tgagcttcccaactactat |
434 |
Q |
| |
|
||| ||| |||| |||||| |
|
|
| T |
24687637 |
tgaccttaccaagtactat |
24687619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University