View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18324_low_1 (Length: 535)
Name: NF18324_low_1
Description: NF18324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18324_low_1 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 506; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 18 - 535
Target Start/End: Complemental strand, 172522 - 172005
Alignment:
| Q |
18 |
gaaatgtcacctgccacttctcacttggtaaaagtgaaatagtgactcagtttggccattctcactgtcggcctttttattttccttaaccagacgagct |
117 |
Q |
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| T |
172522 |
gaaatgtcacctgccacttctcacttggtaaaagtgaaatagtgactcagtttggccattctcactgtcggcctttttattttccttaaccagacgagct |
172423 |
T |
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| Q |
118 |
ttgcgcacagcttgttggatttgtctttcatgctccttaaggatctcttcaaggttatcctctcgaggcagaagtggtccagaatagttgagcatgtggc |
217 |
Q |
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| T |
172422 |
ttgcgcacagcttgttggatttgtctttcatgctccttaaggatctcttcaaggttatcctctcgaggcagaagtggtccagaatagttgagaatgtggc |
172323 |
T |
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| Q |
218 |
catttttgggagcacaaccctgcgacaaacaacaaataaaagcaagtcattattagagagttccatagtcacaatcagaccatagtctcaacttctatca |
317 |
Q |
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| T |
172322 |
catttttgggagcacaaccctgcaacaaacaacaaataaaagcaagtcattattagagagttccatagtcacaatcagaccatagtctcaacttctatca |
172223 |
T |
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| Q |
318 |
agttcatcctcttccataatatcagagagttgcatgtagttctgactccaaaataatagaacaattgcacaaattagtgtttgtaagtaatttctttacc |
417 |
Q |
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| T |
172222 |
agttcatcctcttccataatatcagagagttgcatgtagttctgactccaaaataatagaacaattgcacaaattagtgtttgtaagtaatttctttacc |
172123 |
T |
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| Q |
418 |
atggcacgatcctttctgaacagatggaagtctttcttgcgtgaatgtttggttccatccagtaattgattggactcaccatcatccaaatgactatatc |
517 |
Q |
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| T |
172122 |
atggcacgatcctttctgaacagatggaagtctttcttgcgtgaatgtttggttccatccagtaattgattggactcaccatcatccaaatgactatatc |
172023 |
T |
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| Q |
518 |
tcgtatcaaactgatcct |
535 |
Q |
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| T |
172022 |
tcatatcaaactgatcct |
172005 |
T |
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