View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18324_low_2 (Length: 447)
Name: NF18324_low_2
Description: NF18324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18324_low_2 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 179; Significance: 2e-96; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 154 - 356
Target Start/End: Complemental strand, 18671024 - 18670822
Alignment:
| Q |
154 |
ttgcacaatgtttgagtgtggtgctcgatttggaaaaggagaggtatgttaaaatgccttttacatctcttttacaattcaggagaatagaaatatgaaa |
253 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
18671024 |
ttgcacaatgtttgagtgtggtgctcgatttggaaaaggagaggtacgttaaaatgccttttacatttcttttacaattcaggagaatagaaatatgaaa |
18670925 |
T |
|
| Q |
254 |
ttagattatatctcactaaaaagctatgtgaatatagttgttaggatcacaagttaaataatagcatcaataaatattacgatcttacaatcacttggag |
353 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
18670924 |
ttagattatatctcactaaaaagctatgtgaatatagttgttaagatcacaagttaaatcatagcatcaataaatattacgatcttacatccacttggag |
18670825 |
T |
|
| Q |
354 |
ata |
356 |
Q |
| |
|
||| |
|
|
| T |
18670824 |
ata |
18670822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 240 - 287
Target Start/End: Original strand, 13340199 - 13340246
Alignment:
| Q |
240 |
atagaaatatgaaattagattatatctcactaaaaagctatgtgaata |
287 |
Q |
| |
|
||||||||||||||||||||||||| ||||| ||| ||||||||||| |
|
|
| T |
13340199 |
atagaaatatgaaattagattatatttcactggaaacctatgtgaata |
13340246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University