View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18324_low_3 (Length: 443)
Name: NF18324_low_3
Description: NF18324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18324_low_3 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 1 - 443
Target Start/End: Complemental strand, 22790506 - 22790061
Alignment:
| Q |
1 |
tgaatcaagagttataggttgtagacttgtgtgtattcttcttattcctcaccaaattcaagcaa--tacgtaccatatatataatataaacacaatata |
98 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
22790506 |
tgaatcaagagttataggttgtagacttgtgtgtattcttcttattcctcaccaaattcaagcaagatacgtaccatatatataatataaacacaatata |
22790407 |
T |
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| Q |
99 |
gaagttgattcctagaaatgattgataaataatggtgtagaagaagatgacaaatgagaaaaatatattatgaaatgaaaacacgaataattgtctaaaa |
198 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
22790406 |
gaagttgatttctagaaatgattgataaataatggtgtagaagaggatgacaaatgagaaaaatatattatgaaatgaaaacacgaataattgtctcaaa |
22790307 |
T |
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| Q |
199 |
ggtttgggtttccatacctatgtttcaaaacttcacatggctcttggacttatatatattctattttttctataactgtattcactcacaaaacaaaaga |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22790306 |
ggtttgggtttccatacctatgtttcaaaacttcacatggctcttggacttatatatattctattttttctataactgtattcactcacaaaacaaaaga |
22790207 |
T |
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| Q |
299 |
ggtaccaaaattttacagaaaccaaaccgtgacatcc-ttttactaaacttaactttcaatgatttattgcgtcagtataattgacagtctggaaaaggg |
397 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22790206 |
ggtaccaaaattttacagaaaccaaaccgtgacatcctttttactaaacttaactttcaatgatttattgcgtcagtataattgacagtctggaaaaggg |
22790107 |
T |
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| Q |
398 |
ttgtcaaagaaagaaaagtaacaagaaccgagaacgtgtgttactg |
443 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22790106 |
ttgtcaaagaaagaaaagtaacaagaaccgagaacgtgtgttactg |
22790061 |
T |
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