View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18324_low_4 (Length: 322)
Name: NF18324_low_4
Description: NF18324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18324_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 270; Significance: 1e-151; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 304
Target Start/End: Complemental strand, 5984327 - 5984031
Alignment:
| Q |
1 |
tgtcagtgtcgtgtccagtgtctgcctcaatgcttcatagatcatgagtaataaaaacattaaaacagtgcaaccaggttctaaggaaaaggtttcaaag |
100 |
Q |
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| T |
5984327 |
tgtcagtgtcgtgtccagtgtctgcctcaatgcttcatagatcatgagtaataaaaacattaaaacagcgcaaccaggttctaaggaaaa-------aag |
5984235 |
T |
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| Q |
101 |
attttcttaccattaaagtgacagatgtatgcagtcatcagcacaggagctaccgtgaatagatcaaaaacagaatctacatcagtaatgatcgggaaga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5984234 |
attttcttaccattaaagtgacagatgtatgcagtcatcagcacaggagctaccgtgaatagatcaaaaacagaatctacatcagtaatgatcgggaaga |
5984135 |
T |
|
| Q |
201 |
gtctgggaatctcaatgccctcgctaataatcttgatagttgagatccccacggctatgataaggaaaacaactgctaatccaactgacaatgcagacgt |
300 |
Q |
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| T |
5984134 |
gtctgggaatctcaatgcccccgctaataatcttgatagttgagatccccacggctatgataaggaaaacaactgctaatccaactgacaatgcagacgt |
5984035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 128 - 304
Target Start/End: Complemental strand, 5968145 - 5967969
Alignment:
| Q |
128 |
tatgcagtcatcagcacaggagctaccgtgaatagatcaaaaacagaatctacatcagtaatgatcgggaagagtctgggaatctcaatgccctcgctaa |
227 |
Q |
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| T |
5968145 |
tatgctgtcatcagcacaggaactacagtgaatagatcgaaaactgaagctgcatcagtaatgaccgggaagagtcttggcatcccaatgccgccgctaa |
5968046 |
T |
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| Q |
228 |
taatcttgatagttgagatccccacggctatgataaggaaaacaactgctaatccaactgacaatgcagacgtgaat |
304 |
Q |
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| T |
5968045 |
taatcttgataattgagatccctacggcaatgataaggaaaagaactgctaatccaattgacaatgcagacgtgaat |
5967969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 108 - 304
Target Start/End: Original strand, 8715927 - 8716123
Alignment:
| Q |
108 |
taccattaaagtgacagatgtatgcagtcatcagcacaggagctaccgtgaatagatcaaaaacagaatctacatcagtaatgatcgggaagagtctggg |
207 |
Q |
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||||||| ||||||| | |||||| ||||||||||| ||| |||| ||||||||||| ||||| ||| || |||||||||||| |||||||||||| || |
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| T |
8715927 |
taccattgtagtgacatacgtatgctgtcatcagcaccggaactacagtgaatagatcgaaaactgaagctgcatcagtaatgaccgggaagagtcttgg |
8716026 |
T |
|
| Q |
208 |
aatctcaatgccctcgctaataatcttgatagttgagatccccacggctatgataaggaaaacaactgctaatccaactgacaatgcagacgtgaat |
304 |
Q |
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| T |
8716027 |
catcccaatgccgccgctaataatcttgataattgagatccctacggcaatgataaggaaaagaactgctaatccaattgacaatgcagacgtgaat |
8716123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 117 - 304
Target Start/End: Complemental strand, 5934545 - 5934358
Alignment:
| Q |
117 |
agtgacagatgtatgcagtcatcagcacaggagctaccgtgaatagatcaaaaacagaatctacatcagtaatgatcgggaagagtctgggaatctcaat |
216 |
Q |
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|
||||||||||||| || |||| || ||||||| |||| |||||||| |||||||| ||| || |||||||||||| |||||||||||| || ||| |||| |
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| T |
5934545 |
agtgacagatgtaagcggtcaccaacacaggaactacggtgaataggtcaaaaactgaagctgcatcagtaatgaccgggaagagtcttggcatcccaat |
5934446 |
T |
|
| Q |
217 |
gccctcgctaataatcttgatagttgagatccccacggctatgataaggaaaacaactgctaatccaactgacaatgcagacgtgaat |
304 |
Q |
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| T |
5934445 |
gcctccactaataatcttgataattgagatccctacggcaatgataaggaaaacaactgctaatccaactgataatgcagatgtgaat |
5934358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 88 - 304
Target Start/End: Complemental strand, 5963166 - 5962950
Alignment:
| Q |
88 |
aaaggtttcaaagattttcttaccattaaagtgacagatgtatgcagtcatcagcacaggagctaccgtgaatagatcaaaaacagaatctacatcagta |
187 |
Q |
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|||||||||||| | |||| ||||||| |||||||||| || || ||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |
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| T |
5963166 |
aaaggtttcaaacaatttcataccattgtagtgacagatataagctgtcatcagcacaggaaatacagtgaatagatcaaaaacagaatctacatcagta |
5963067 |
T |
|
| Q |
188 |
atgatcgggaagagtctgggaatctcaatgccctcgctaataatcttgatagttgagatccccacggctatgataaggaaaacaactgctaatccaactg |
287 |
Q |
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|||| |||||||||||||| ||| |||||| | ||||||||||||||| ||||||||||| | || |||| || |||| |||||||||||||| || |
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| T |
5963066 |
atgacagggaagagtctgggcatcccaatgcgtccactaataatcttgataattgagatccccccagcaatgacgagaaaaagaactgctaatccaattg |
5962967 |
T |
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| Q |
288 |
acaatgcagacgtgaat |
304 |
Q |
| |
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| T |
5962966 |
ataatgcagatgtgaat |
5962950 |
T |
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