View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18325_high_1 (Length: 827)

Name: NF18325_high_1
Description: NF18325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18325_high_1
NF18325_high_1
[»] chr4 (6 HSPs)
chr4 (506-817)||(4857693-4858004)
chr4 (262-593)||(5176519-5176867)
chr4 (18-127)||(4858001-4858110)
chr4 (53-191)||(5176386-5176521)
chr4 (316-386)||(5132935-5133005)
chr4 (506-544)||(5132751-5132789)


Alignment Details
Target: chr4 (Bit Score: 292; Significance: 1e-163; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-163
Query Start/End: Original strand, 506 - 817
Target Start/End: Complemental strand, 4858004 - 4857693
Alignment:
Q  506 taaattttgtaggacacaagtttgttctaggtgccctattctcttgcaaatctaacaaataattgaacatagttgttaaaatcattcaattatagccgca 605  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||     
T  4858004 taaattttgtaggacacaagtttgttctaggtgccctattctcttgcaaatctaacaaataattgaacatagttgttaaaatcgttcaattatagccgct 4857905  T
Q  606 cggaccagcttcttggaacaaatgtataaacgattttgtcatggaaccgcttaaactgttaagagctgatctggtttttgctcaggacatgattatttct 705  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  4857904 cggaccagcttcttggaacaaatgtataaacgattttctcatggaaccgcataaactgttaagagctgatctggttttcgctcaggacatgattatttct 4857805  T
Q  706 ttgttaaaatctttgtaaaatgctactttaatagaatacaagtaatagcttacaaccctcattcttaatacatcaaattttgtaagtaagtaattcattt 805  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4857804 ttgttaaaatctttgtaaaatgctactttaatagaatacaagtaatagcttacaaccctcattcttaatacatcaaattttgtaagtaagtaattcattt 4857705  T
Q  806 tgagaccctatg 817  Q
    ||||||||||||    
T  4857704 tgagaccctatg 4857693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 139; E-Value: 3e-72
Query Start/End: Original strand, 262 - 593
Target Start/End: Original strand, 5176519 - 5176867
Alignment:
Q  262 aacaagatattgtaattagttacctggcctatgtctaatttatttttccctgctacatatgacattgtcaaacgtttgattgcagctagttagaaagagt 361  Q
    ||||||| ||||| ||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| || |||||||||||||| |||||||||    
T  5176519 aacaagagattgtgattagttacctggcctatgtctaatttatttttccgtactacatatgacattgtcaaatgtctgattgcagctagtgagaaagagt 5176618  T
Q  362 ttcaaacaatttccgaggaaaaccg----------aagaaacaccca---tcagtgatggtgaacttaggattcattttgttttagccatattttcctgc 448  Q
    ||||||||||  | |||||||||||          |||||| || ||   ||| |||||||||||||| || | |||||||||| ||||| |||| ||||    
T  5176619 ttcaaacaatcgctgaggaaaaccgcaacaaacaaaagaaaaacacatagtcaatgatggtgaacttaagaatgattttgtttttgccattttttactgc 5176718  T
Q  449 tattacttgtgggaattgcttttgccaaactgctagcagcgatatattt----tcctgctgtaaattttgtaggacacaagtttgttctaggtgccctat 544  Q
    ||||| |||||||| || |||||||||||||||||  || ||||||| |        |||||||| ||||||||||||||||||||||||||||| ||||    
T  5176719 tattatttgtgggagttacttttgccaaactgctacgagtgatatatctcagaaggggctgtaaaatttgtaggacacaagtttgttctaggtgcactat 5176818  T
Q  545 tctcttgcaaatctaacaaataattgaacatagttgttaaaatcattca 593  Q
    ||||||| ||||| ||||||||||||| |||||||||||||||| ||||    
T  5176819 tctcttgaaaatcaaacaaataattgagcatagttgttaaaatcgttca 5176867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 18 - 127
Target Start/End: Complemental strand, 4858110 - 4858001
Alignment:
Q  18 ctaacagcaggtaattgtgattttttattgctactcgattatgtttccttaaattccaattttgttgatagttgatacttaaattacatctttaaaaata 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  4858110 ctaacagcaggtaattgtgattttttattgctactcgattatgtttccttaaattccaatttcgttgatagttgatacttaaattacatctttaaaaata 4858011  T
Q  118 agtagataaa 127  Q
    ||||||||||    
T  4858010 agtagataaa 4858001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 53 - 191
Target Start/End: Original strand, 5176386 - 5176521
Alignment:
Q  53 cgattatgtttccttaaattccaattttgttgatagttgatacttaaattacatctttaaaaataagtagataaaattctgtttcgaagaagaagagatt 152  Q
    |||||||||||||||||||||| |||||||||||| || |||||||||||||||||| ||||||||| |||||||| ||||||||    || ||||||||    
T  5176386 cgattatgtttccttaaattccgattttgttgatattttatacttaaattacatcttaaaaaataagcagataaaactctgtttc---aaacaagagatt 5176482  T
Q  153 gctattctcaatccactaaaaactcatactcacaacaac 191  Q
    |||||||||| |||| ||| |||  ||||||||||||||    
T  5176483 gctattctcattccattaagaacaaatactcacaacaac 5176521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 316 - 386
Target Start/End: Complemental strand, 5133005 - 5132935
Alignment:
Q  316 acatatgacattgtcaaacgtttgattgcagctagttagaaagagtttcaaacaatttccgaggaaaaccg 386  Q
    ||||||||||||||||||||  ||||||| |||||| |||| ||||||||||||||| | |||||||||||    
T  5133005 acatatgacattgtcaaacgcctgattgctgctagtgagaaggagtttcaaacaattgcagaggaaaaccg 5132935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 506 - 544
Target Start/End: Complemental strand, 5132789 - 5132751
Alignment:
Q  506 taaattttgtaggacacaagtttgttctaggtgccctat 544  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  5132789 taaattttgtaggacacaagtttgttctaggtgcactat 5132751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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