View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18325_high_13 (Length: 374)
Name: NF18325_high_13
Description: NF18325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18325_high_13 |
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Alignment Details
Target: chr5 (Bit Score: 313; Significance: 1e-176; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 26 - 358
Target Start/End: Complemental strand, 43261386 - 43261055
Alignment:
| Q |
26 |
gtaagttacatttcaatttagtataccaacaaaaacgtaacagcagtgggaataacatgagattccttatccgattcatcatattacgtgtataaacatg |
125 |
Q |
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| T |
43261386 |
gtaagttacatttcaattt-gtataccaacaaaaacgtaacagcagtgggaataacatgagattccttatccgattcatcatattacgtgtataaacatg |
43261288 |
T |
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| Q |
126 |
gttggagaactagatcacactctcatctttactatattgcaccatgcaatattcaccacaagaacttccacgttgcttgcgtgcatgtggcttagagttc |
225 |
Q |
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| T |
43261287 |
gttggagaactagatcacactctcatctttactatattgcaccatgcaatattcaccacaagaacttccacgttgcttgggtgcatgtggcttagagttc |
43261188 |
T |
|
| Q |
226 |
ttcatatcttcctccatttgacttatagttacttcaatatctagcattcattcttaaccatctactacattcttgaagaagaaaaaacttgttcctagag |
325 |
Q |
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| T |
43261187 |
ttcatatcttcctccatttgacttatagttacttcaatatctatcattcattcttaaccatctactacattcttgaagaagaaaaaacttgttcctagag |
43261088 |
T |
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| Q |
326 |
gcaacagaggagggaaaaacatggctacacaag |
358 |
Q |
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| T |
43261087 |
gcaacaaaggagggaaaaacatggctacacaag |
43261055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 263 - 359
Target Start/End: Complemental strand, 43257554 - 43257458
Alignment:
| Q |
263 |
tatctagcattcattcttaaccatctactacattcttgaagaagaaaaaacttgttcctagaggcaacagaggagggaaaaacatggctacacaagt |
359 |
Q |
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| T |
43257554 |
tatctatcattcattcttaaccatctactacattcttgaagaagaaaaaacttgttcctagaggcaacaaagaagggaaaaacatggctacacaagt |
43257458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 216 - 244
Target Start/End: Complemental strand, 43257582 - 43257554
Alignment:
| Q |
216 |
cttagagttcttcatatcttcctccattt |
244 |
Q |
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| T |
43257582 |
cttagagttcttcatatcttcctccattt |
43257554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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