View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18325_high_14 (Length: 305)
Name: NF18325_high_14
Description: NF18325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18325_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 13 - 288
Target Start/End: Original strand, 4844108 - 4844384
Alignment:
| Q |
13 |
aatatacataatgaaaagcttttgttaattaatttcaattcctaccaatgattcataaccagtttttcattttatttaaagtctcttattatcgttaata |
112 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| | |
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| T |
4844108 |
aatatacataatgaaaagcttttgttaattaatttcaattcctaccaatgattcataaccactttttcattttatttaaagtctcttatcatcgttaaaa |
4844207 |
T |
|
| Q |
113 |
attaatannnnnnn-gggatcttataattgtcttctaattcattcacttcatcacataaacttcataaataaattattgaaacaaaacgtaccttgaaca |
211 |
Q |
| |
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||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
4844208 |
attaatattttctttgggattttataattgtcttctaattcattcacttcatcacataaactccataaataaattattgaaacaaaacgtaccttgaaca |
4844307 |
T |
|
| Q |
212 |
taaaagttttccatcgaattagaacccaacttcaaagttgttagagcagtcaatccatttaaacttggcaaaatgct |
288 |
Q |
| |
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|| ||||||| |||||||||| ||||||| || |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4844308 |
tagaagtttttcatcgaattaaaacccaagtttaaagttgttagagcagtcaatccatttaaacttggcaaaatgct |
4844384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 21 - 288
Target Start/End: Complemental strand, 5180924 - 5180655
Alignment:
| Q |
21 |
taatgaaaagcttttgttaattaatttcaattcctaccaatgattcataaccagtttttcattttatttaaagtctcttattatcgttaataattaatan |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |
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| T |
5180924 |
taatgaaaagcttttgttaattaatttcaattcctaccaatgattcataaccagtttttcattttatttaaagtttcttattatcgttaaaaattaatat |
5180825 |
T |
|
| Q |
121 |
nnnnnnggg-atcttataattgtcttct-aattcattcacttcatcacataaacttcataaataaattattgaaacaaaacgtaccttgaacataaaagt |
218 |
Q |
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||| |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || | |||| |
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| T |
5180824 |
tttcttggggatcttataattgtcttcttaattcattcacttcatcacataaactccataaataaattattgaaacaaaacgtaccttgagcagagaagt |
5180725 |
T |
|
| Q |
219 |
tttccatcgaattagaacccaacttcaaagttgttagagcagtcaatccatttaaacttggcaaaatgct |
288 |
Q |
| |
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||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5180724 |
ttttcatcaaattagaacccaacttcaaagttgttagagcagtcaatccatttaaacttggcaaaatgct |
5180655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 13 - 288
Target Start/End: Complemental strand, 5171567 - 5171291
Alignment:
| Q |
13 |
aatatacataatgaaaagcttttgttaattaatttcaattcctaccaatgattcataaccagtttttcattttatttaaagtctcttattatcgttaata |
112 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
5171567 |
aatatacataatgaaaagcttttgttaattaatttcaattcctaccaatgattcataaccagtttttcattttatttaaagtctcttattatcgttaaaa |
5171468 |
T |
|
| Q |
113 |
attaatannnnnnngg-gatcttataattgtcttctaattcattcacttcatcacataaacttcataaataaattattgaaacaaaacgtaccttgaaca |
211 |
Q |
| |
|
||||||| | ||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| ||||||||| || |
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| T |
5171467 |
attaatattttcttcgagatcttataattgtcttctaattcattcacttcatcacataaactccacaaataaattattgaaacaaaatgtaccttgagca |
5171368 |
T |
|
| Q |
212 |
taaaagttttccatcgaattagaacccaacttcaaagttgttagagcagtcaatccatttaaacttggcaaaatgct |
288 |
Q |
| |
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| ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |
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| T |
5171367 |
gagaagtttttcattgaattagaacccaacttcaaagttgttagagcagtcaatccattcaaacttgacaaaatgct |
5171291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 13 - 287
Target Start/End: Complemental strand, 5154973 - 5154699
Alignment:
| Q |
13 |
aatatacataatgaaaagcttttgttaattaatttcaattcctaccaatgattcataaccagtttttcattttatttaaagtctcttattatcgttaata |
112 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5154973 |
aatatacataatgaaaagcttttgttaattaatttcaattcctaccaatgatttataaccagtttttcattttatttaaagtctcttattatcgttaata |
5154874 |
T |
|
| Q |
113 |
attaatannnnnnngggatcttataattgtcttctaattcattcacttcatcacataaacttcataaataaattattgaaacaaaacgtaccttgaacat |
212 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | |
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| T |
5154873 |
attaatatttttttgggatcttataattgtcttctaattcattcacttcatcacataaactccataaataaattattgaaacaaaacgtaccttgagaag |
5154774 |
T |
|
| Q |
213 |
aaaagttttccatcgaattagaacccaacttcaaagttgttagagcagtcaatccatttaaacttggcaaaatgc |
287 |
Q |
| |
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| ||||||||||| |||| ||| | |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5154773 |
agaagttttccatgtcattatcaccgaggttcaaagttgttagagcagtcaatccatttaaacttggcaaaatgc |
5154699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 14 - 288
Target Start/End: Complemental strand, 5194192 - 5193918
Alignment:
| Q |
14 |
atatacataatgaaaagcttttgttaattaatttcaattcctaccaatgattcataaccagtttttcattttatttaaagtctcttattatcgttaataa |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| || |
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| T |
5194192 |
atatacataatgaaaagcttttgttaattaatttcaattcctaccgatgattcataaccactttttcattttatttaaagtctcttattatcgttaaaaa |
5194093 |
T |
|
| Q |
114 |
ttaatannnnnnngggatcttataattgtcttctaattcattcacttcatcacataaacttcataaataaattattgaaacaaaacgtaccttgaacata |
213 |
Q |
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||| |||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| || | |
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| T |
5194092 |
ttatattttcttggggatcttataattgtattctaattcattcacttcatcacataaactccataaataaattattgaaacaaaatgtaccttgagcaga |
5193993 |
T |
|
| Q |
214 |
aaagttttccatcgaattagaacccaacttcaaagttgttagagcagtcaatccatttaaacttggcaaaatgct |
288 |
Q |
| |
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||||||||||||||||| ||| |||||||||||||||| |||||||||||||| || ||||||||||||||||| |
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| T |
5193992 |
gaagttttccatcgaattggaaaccaacttcaaagttgtcagagcagtcaatcctttcaaacttggcaaaatgct |
5193918 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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