View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18325_high_16 (Length: 259)
Name: NF18325_high_16
Description: NF18325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18325_high_16 |
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Alignment Details
Target: chr6 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 16 - 245
Target Start/End: Original strand, 29008579 - 29008808
Alignment:
| Q |
16 |
aatcattacctagtttgtaagcacttgctagatttaacaaaatttcagaaaatctttaccaaaatatatagaaagtttcagaaaattcaaagattaataa |
115 |
Q |
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| T |
29008579 |
aatcattacctagtttgtaagcacttgctagatttaacaaaatttcagaaattctttaccaaaatatatacaaagtttcagaaaattcaaagattaataa |
29008678 |
T |
|
| Q |
116 |
tataagatcgtaaccgttttttgcattttcacgaaaatgattctgttgaaatcaattcaagacatgaagaaacgtaccgagatcgtcgccgacgttgaag |
215 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29008679 |
tataagatcgtaaccgttttttgtattttcacgaaaatgattctgttgaaatcaattcaagacatgaagaaacgtaccgagatcgtcgccgacgttgaag |
29008778 |
T |
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| Q |
216 |
ctctcagtggaagcccaaacctgcatattg |
245 |
Q |
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| T |
29008779 |
ctctcagtggaagcccaatcctgcatattg |
29008808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 16 - 221
Target Start/End: Complemental strand, 21408627 - 21408425
Alignment:
| Q |
16 |
aatcattacctagtttgtaagcacttgctagatttaacaaaatttcagaaaatctttaccaaaatatatagaaagtttcagaaaattcaaagattaataa |
115 |
Q |
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||||||||| ||||||| ||||||||||||||||| ||||||||| |||||||||||||||||| ||||| ||||||||||||||||||||||||||| | |
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| T |
21408627 |
aatcattacttagtttgcaagcacttgctagattttacaaaattttagaaaatctttaccaaaaaatatacaaagtttcagaaaattcaaagattaatta |
21408528 |
T |
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| Q |
116 |
tataagatcgtaaccg--ttttttgcattttcacgaaaatgattctgttgaaatcaattcaagacatgaagaaacgtaccgagatcgtcgccgacgttga |
213 |
Q |
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|| ||||||||||| | ||||||| ||||||| ||||||||||| |||||| |||||||||||||||||||||| | || ||| ||||| |||| |
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| T |
21408527 |
tacaagatcgtaactgttttttttgtgttttcacaaaaatgattctattgaaa-----tcaagacatgaagaaacgtaccaaaattgtcaccgacattga |
21408433 |
T |
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| Q |
214 |
agctctca |
221 |
Q |
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|||||||| |
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| T |
21408432 |
agctctca |
21408425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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