View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18325_high_4 (Length: 646)

Name: NF18325_high_4
Description: NF18325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18325_high_4
NF18325_high_4
[»] chr4 (1 HSPs)
chr4 (1-627)||(54013973-54014599)


Alignment Details
Target: chr4 (Bit Score: 603; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 603; E-Value: 0
Query Start/End: Original strand, 1 - 627
Target Start/End: Original strand, 54013973 - 54014599
Alignment:
Q  1 catcattgaagccccaaagataggtattccaatcactgccatcaaaattagatgttccaaaaatgttgcatttccagctgcaccaatacaaagtcatgct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54013973 catcattgaagccccaaagataggtattccaatcactgccatcaaaattagatgttccaaaaatgttgcatttccagctgcaccaatacaaagtcatgct 54014072  T
Q  101 taatcaccaatacaatatttacatgtagtttggaaggagtatagaataggttccaatataggataggtcctattctaatatagggtcggtcaaaaaatta 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  54014073 taatcaccaatacaatatttacatgtagtttggaaggagtatagaataggttccaatataggatcggtcctattctaatatagggtcggtcaaaaaatta 54014172  T
Q  201 cacgtgtattcaatcacatctaaccatataatcagatagatatttatgtacatattttaacaataaatttaagaaaacgatatcattgtgtaatttaatt 300  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54014173 cacgtgtattcaatcacatctaaccatataatcatatagatatttatgaacatattttaacaataaatttaagaaaacgatatcattgtgtaatttaatt 54014272  T
Q  301 agatgcgtgtgtaaaaatgtttactctgattaattgatcgtgtggataaagtaaatagtaaacacatggaggtatcatggttcatgaaccggaataaata 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54014273 agatgcgtgtgtaaaaatgtttactctgattaattgatcgtgtggataaagtaaatagtaaacacatggaggtatcatggttcatgaaccggaataaata 54014372  T
Q  401 tgcaactggtcttcctctatggctgtataaatagacagtttccaaaaacataatccatgtgataaggcttaaaaagttaaattgaagatctgagaatctc 500  Q
    || ||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54014373 tgtaactggtcttcctttatggctttataaatagacagtttccaaaaacataatccatgtgataaggcttaaaaagttaaattgaagatctgagaatctc 54014472  T
Q  501 accggttaaaggcgttggtaccggagatgaatgatgaagagagtgatagtttttgaaaagataatctccatgaaatttcttatgtacccaataataaagt 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54014473 accggttaaaggcgttggtaccggagatgaatgatgaagagagtgatagtttttgaaaagataatctccatgaaatttcttatgtacccaataataaagt 54014572  T
Q  601 ggctctgaaactcccacatgtagaatc 627  Q
    |||||||||||||||||||||||||||    
T  54014573 ggctctgaaactcccacatgtagaatc 54014599  T

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