View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18325_high_5 (Length: 634)
Name: NF18325_high_5
Description: NF18325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18325_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 388; Significance: 0; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 134 - 618
Target Start/End: Original strand, 25732017 - 25732497
Alignment:
| Q |
134 |
tacatgctatctttgatctcgggaatttcggaattgaattgtagggtcatgctggtttattagaatttgaattcttagtaaatatttagatggaatggtt |
233 |
Q |
| |
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|||| |||||||||||||||||||||||| ||||||||| ||| ||||||||||| |||||||||||||||||| |||||||||| || ||| ||||||| |
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| T |
25732017 |
tacacgctatctttgatctcgggaatttcagaattgaatggtaaggtcatgctggattattagaatttgaattcgtagtaaatatgtacatgaaatggtt |
25732116 |
T |
|
| Q |
234 |
ttgatatttaattgtgacatgatatatacaagggctagttaataaaaacgtttttgaagcaaaataaaccagtgcagaaaataaattcacaacaattcga |
333 |
Q |
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| T |
25732117 |
ttgatatttaactgtgatatg----gtacaagggctagttaataaaaacgattttgaagcaatataaaccagtgcagaaaaaaaattcacaaaaattcga |
25732212 |
T |
|
| Q |
334 |
aaaccatttttcttctaacatattttgtggttgaataaataataattctttcataaaacaatggatgttagcatatgttggattactatatatgatgatt |
433 |
Q |
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| T |
25732213 |
aaaccatttttcttctaacatattttgtggtagaataaataataattctttcataaaacaatggatgttagcatatgttggattactatatatgatgatt |
25732312 |
T |
|
| Q |
434 |
gccaacattacttggatacaacgtatagtcatagattaccatttgtggaacaatgtttcaagcaatttatgtagacacattatcttcaaaacattcaaag |
533 |
Q |
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||| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25732313 |
gcctacattacttggatataacgtatagtcatagattaccatttgtggaacaatatttcaagcaatttatgtagacacattatcttcaaaacattcaaag |
25732412 |
T |
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| Q |
534 |
ttggtaaggaaaacaacagaagaatatgaaagtagtaaatccaagagacagaatgtattagcaatgcttttgtttaggatgaaca |
618 |
Q |
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| T |
25732413 |
ttggtaaggaaaacaacagaagaatatgaaagtagtaaatccaagagacagaatgtattagcaatgcttttgtttaggatgaaca |
25732497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 385 - 599
Target Start/End: Original strand, 25739940 - 25740153
Alignment:
| Q |
385 |
cataaaacaatggatgttagcatatgttggattactatatatgatgattgccaacattacttggatacaacgtatagtcatagattaccatttgtggaac |
484 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||||||| |||||||||| |||||| || ||| ||| ||||||||| |||||||||| |||||| |
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| T |
25739940 |
cataaaacagtggatgttagcatatgttggattactatatacgatgattgcctacattatttcaatataac--atagtcatatattaccatttatggaac |
25740037 |
T |
|
| Q |
485 |
aatgtttcaagcaatttatgta-gacacattatcttcaaaacattcaaagttggtaaggaaaacaacagaagaatatgaaagtagtaaatccaagagaca |
583 |
Q |
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|||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |
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| T |
25740038 |
aatgtttcaagcaatttatgtaagacacattatcttcaacacattcaaagttggtaaggaaaacaacagaagaatatgaaagtagtaaatccataaaaca |
25740137 |
T |
|
| Q |
584 |
gaatgtattagcaatg |
599 |
Q |
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|||||||| ||||||| |
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| T |
25740138 |
gaatgtatcagcaatg |
25740153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 367 - 576
Target Start/End: Original strand, 25746072 - 25746279
Alignment:
| Q |
367 |
aataaataataattctttcataaaacaatggatgttagcatatgttggattactatatatgatgattgccaacattacttggatacaacgtatagtcata |
466 |
Q |
| |
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||||| ||||||||||||||||||||| ||||||||| |||| |||||||||||||||||| |||||| |||||||| |||| |||||| |||||| |
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| T |
25746072 |
aataattaataattctttcataaaacagtggatgttatcatacactggattactatatatgatcattgcctacattactcagatataacgta--gtcata |
25746169 |
T |
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| Q |
467 |
gattaccatttgtggaacaatgtttcaagcaatttatgtagacacattatcttcaaaacattcaaagttggtaaggaaaacaacagaagaatatgaaagt |
566 |
Q |
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|||||||| | |||||||||||||||||||| |||||| || ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| | |
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| T |
25746170 |
aattaccatatatggaacaatgtttcaagcaaattatgtggagacattattttcaaaacattcaaagttggtaaggaaaacaacagaagaatgtgaaact |
25746269 |
T |
|
| Q |
567 |
agtaaatcca |
576 |
Q |
| |
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||| |||||| |
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| T |
25746270 |
agttaatcca |
25746279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 132 - 353
Target Start/End: Original strand, 25739674 - 25739890
Alignment:
| Q |
132 |
tttacatgctatctttgatctcgggaatttcggaattgaattgtagggtcatgctggtttattagaatttgaattcttagtaaatatttagatggaatgg |
231 |
Q |
| |
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|||||||||| ||||||||||| ||| ||||||| |||||| ||| ||||||| | ||||||||||||||||||||| | |||| ||||| ||||||||| |
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| T |
25739674 |
tttacatgctttctttgatctcaggattttcggatttgaatggtaaggtcatggttgtttattagaatttgaattctaaataaaaatttacatggaatgg |
25739773 |
T |
|
| Q |
232 |
ttttgatatttaattgtgacatgatatatacaagggctagttaataaaaacgtttttgaagcaaaataaaccagtgcagaaaataaattcacaacaattc |
331 |
Q |
| |
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||||||||| |||||||| | | || || ||||||||||||||||| ||||||||||||| |||| ||||||||||||| ||||||| |||||||| |
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| T |
25739774 |
atttgatattcaattgtgatacgctacat----gggctagttaataaaaatgtttttgaagcaatataa-ccagtgcagaaaacaaattcagaacaattc |
25739868 |
T |
|
| Q |
332 |
gaaaaccatttttcttctaaca |
353 |
Q |
| |
|
|||||||||||||||||||||| |
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| T |
25739869 |
gaaaaccatttttcttctaaca |
25739890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 25731781 - 25731895
Alignment:
| Q |
1 |
cacagaagaattcaaacacaactc--tatgtttgcaaacactagctttacctgaggataaactttcaaaaacacctcataacttgacctaaatgagaaaa |
98 |
Q |
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|||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||| |||||| ||||||||||||||||| |||||||||||||| |
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| T |
25731781 |
cacagaagaattcaaacacaactcaatatgtctgcaaacactagctttacctaaggataatctttcataaacacctcataacttggcctaaatgagaaaa |
25731880 |
T |
|
| Q |
99 |
ttgagctcttatatt |
113 |
Q |
| |
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||||||||||||||| |
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| T |
25731881 |
ttgagctcttatatt |
25731895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 119 - 208
Target Start/End: Original strand, 25745705 - 25745794
Alignment:
| Q |
119 |
aatttctatggaatttacatgctatctttgatctcgggaatttcggaattgaattgtagggtcatgctggtttattagaatttgaattct |
208 |
Q |
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|||||||||||| |||||||||||||||||||||| ||| |||||||||||||| || ||||||||| |||||||||| |||||||||| |
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| T |
25745705 |
aatttctatggagtttacatgctatctttgatctcaggattttcggaattgaatgttaaggtcatgcttgtttattagagtttgaattct |
25745794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 25745486 - 25745577
Alignment:
| Q |
1 |
cacagaagaattcaaacacaactc--tatgtttgcaaacactagctttacctgaggataaactttcaaaaacacctcataacttgacctaaa |
90 |
Q |
| |
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||||||||||||||| ||||||| |||||||| |||||| |||||||||| |||||||||||||||||||| |||| |||||| |||||| |
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| T |
25745486 |
cacagaagaattcaagaacaactcaatatgtttgtaaacaccagctttacctaaggataaactttcaaaaacatctcagaacttggcctaaa |
25745577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 25739467 - 25739549
Alignment:
| Q |
1 |
cacagaagaattcaaacacaactc--tatgtttgcaaacactagctttacctgaggataaactttcaaaaacacctcataact |
81 |
Q |
| |
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||||||||||||| | |||||||| ||||||| ||||||||||||| ||| || |||||||||| ||||||||||||||| |
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| T |
25739467 |
cacagaagaattcgagcacaactcaatatgtttataaacactagcttttcctaagcataaactttcggaaacacctcataact |
25739549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 510 - 603
Target Start/End: Original strand, 25754682 - 25754774
Alignment:
| Q |
510 |
acattatcttcaaaacattcaaagttggtaaggaaaacaacagaagaatatgaaagtagtaaatccaagagacagaatgtattagcaatgcttt |
603 |
Q |
| |
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||||| |||||||||||||||||||||| | ||||||||| ||||| ||| ||| ||| ||| || ||||||||||||||||||| ||||| |
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| T |
25754682 |
acattgtcttcaaaacattcaaagttggcatcgaaaacaactgaagactattaaaccagttaat-cataagacagaatgtattagcaaagcttt |
25754774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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