View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18325_high_7 (Length: 541)

Name: NF18325_high_7
Description: NF18325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18325_high_7
NF18325_high_7
[»] chr4 (19 HSPs)
chr4 (1-516)||(27570360-27570872)
chr4 (3-341)||(27412166-27412500)
chr4 (8-338)||(27422716-27423044)
chr4 (242-318)||(27415100-27415176)
chr4 (2-106)||(27566262-27566365)
chr4 (1-110)||(27415341-27415453)
chr4 (1-204)||(27420021-27420234)
chr4 (239-338)||(27425324-27425423)
chr4 (242-318)||(27419887-27419963)
chr4 (2-104)||(27425540-27425641)
chr4 (210-312)||(27566449-27566551)
chr4 (14-65)||(27516917-27516968)
chr4 (14-65)||(27466595-27466646)
chr4 (14-65)||(27473668-27473719)
chr4 (3-65)||(27557266-27557329)
chr4 (51-110)||(27563705-27563763)
chr4 (15-64)||(27431468-27431518)
chr4 (23-65)||(27445116-27445158)
chr4 (22-65)||(27508119-27508163)


Alignment Details
Target: chr4 (Bit Score: 342; Significance: 0; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 516
Target Start/End: Original strand, 27570360 - 27570872
Alignment:
Q  1 tgaatgctttaggatgtgaatgatttgtgttggttctaaatgcttgcagtcatgaatatatatagttaaaagaataattgagaaaccattggctacttga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27570360 tgaatgctttaggatgtgaatgatttgtgttggttctaaatgcttgcagtcatgaatatatatagttaaaagaataattgagaaaccattggctacttga 27570459  T
Q  101 atgattggtggagggatatactgtagtataggattaggatggagtcatagcatctacatggagacaagagcaacatatataagatcacatggtattgtct 200  Q
    |||||||||||||| ||||||||||||||||||| ||||||||||||| | ||||||| |||||||||||||   |||||||||||||||||||||||||    
T  27570460 atgattggtggaggtatatactgtagtataggatcaggatggagtcatggaatctacaaggagacaagagca---tatataagatcacatggtattgtct 27570556  T
Q  201 tagaggtctaccctaccataaaacagacctattcatggaagagaaagtttaattgaccttgatacttaattaggaatgcaaggacctcaaagttctgtcc 300  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27570557 tagaggtctaccctaccataaaacagacctattcatggaatagaaagtttaattgaccttgatacttaattaggaatgcaaggacctcaaagttctgtcc 27570656  T
Q  301 tggtatgcaaatatcatggagttggtcttgcaaaaataaaagaaaatgttgtatataaactctcatgaacttgcgctcaacatccattatcttcattccg 400  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||| || |||||  ||||||||||||||| ||||||| |||||||||| | ||     
T  27570657 tggtatgcaaatatcatggagttggtcttgcaaaaataaaataaaatgtggtttataatgtctcatgaacttgcgttcaacattcattatcttcttgcct 27570756  T
Q  401 actaacactatcgcatagcagctaaaaattaggtaatactcaagcatttctatatccaaatatatcggatataaatacaaatgatagatgtatagtagcg 500  Q
     |||||||| || | |||| ||||| ||||||||  ||| ||||| || | |  | || ||| ||| |||||| || |||||| |||||||||| ||||     
T  27570757 cctaacactgtctcttagctgctaacaattaggtcctacacaagctttacaagttgcacataaatctgatatatattcaaatggtagatgtatattagct 27570856  T
Q  501 gcattgacaattcgaa 516  Q
    |||||| |||||||||    
T  27570857 gcattgtcaattcgaa 27570872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 3 - 341
Target Start/End: Complemental strand, 27412500 - 27412166
Alignment:
Q  3 aatgctttaggatgtgaatgatttgtgttggttctaaatgcttgcagtcatgaatatatatagttaaaagaataattgagaaaccattggctacttgaat 102  Q
    |||| |||||||||||||||||||||||| || |||||||||||||| ||||||||||||||| |||||||||| |||||||||||||||||||||||||    
T  27412500 aatggtttaggatgtgaatgatttgtgtttgtcctaaatgcttgcagccatgaatatatatagataaaagaata-ttgagaaaccattggctacttgaat 27412402  T
Q  103 gattggtggagggatatactgtagtataggattaggatggagtcatagcatctacatggagacaagagcaacatatataagatcacatggtattgtctta 202  Q
    ||||||||||||  |||||||||||||||||| ||||||||||||| | ||||||| |||||||||||||   |||||||||||||||||||||||||||    
T  27412401 gattggtggaggtttatactgtagtataggatcaggatggagtcatggaatctacaaggagacaagagca---tatataagatcacatggtattgtctta 27412305  T
Q  203 gaggtctaccctaccataaaacagacctattcatggaagagaaagtttaattgaccttgatacttaattaggaatgcaaggacctcaaagttctgtcctg 302  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27412304 gaggtctaccctaccataaaacagacctattcatggaatagaaagtttaattgaccttgatacttaattaggaatgcaaggacctcaaagttctgtcctg 27412205  T
Q  303 gtatgcaaatatcatggagttggtcttgcaaaaataaaa 341  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  27412204 gtatgcaaatatcatggagttggtcttacaaaaataaaa 27412166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 8 - 338
Target Start/End: Complemental strand, 27423044 - 27422716
Alignment:
Q  8 tttaggatgtgaatgatttgtgttggttctaaatgcttgcagtc-atgaa-tatatatagttaaaagaataattgagaaaccattggctacttgaatgat 105  Q
    |||||||||||||||||| | |||||||||||||| ||  |  | || || | ||||||| |||||||||  ||||||||||||||||||||||||| ||    
T  27423044 tttaggatgtgaatgattagagttggttctaaatggttctaacctataaaatttatatagataaaagaatt-ttgagaaaccattggctacttgaattat 27422946  T
Q  106 tggtggagggatatactgtagtataggattaggatggagtcatagcatctacatggagacaagagcaacatatataagatcacatggtattgtcttagag 205  Q
    | ||||| | ||||||||||||||||||| ||||||||||||| | ||||||| |||||||||||||   ||||||||||||||||||||||||||||||    
T  27422945 tagtggaagtatatactgtagtataggatcaggatggagtcatggaatctacaaggagacaagagca---tatataagatcacatggtattgtcttagag 27422849  T
Q  206 gtctaccctaccataaaacagacctattcatggaagagaaagtttaattgaccttgatacttaattaggaatgcaaggacctcaaagttctgtcctggta 305  Q
    | ||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| || |||||||  ||| ||| | ||||||| ||| ||||||    
T  27422848 gcctaccctaccataaaacagacctattcatggaatagaaagtttaattgaccttcatatttgattaggatggcagggatcgcaaagttttgttctggta 27422749  T
Q  306 tgcaaatatcatggagttggtcttgcaaaaata 338  Q
    ||||||| |  ||||||  ||| ||||||||||    
T  27422748 tgcaaattttgtggagtctgtcatgcaaaaata 27422716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 242 - 318
Target Start/End: Complemental strand, 27415176 - 27415100
Alignment:
Q  242 agaaagtttaattgaccttgatacttaattaggaatgcaaggacctcaaagttctgtcctggtatgcaaatatcatg 318  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||| |||| ||||||||||||||||||||||||||    
T  27415176 agaaagtttaattgaccttgatacttaattaagaaggcaaggaccgcaaacttctgtcctggtatgcaaatatcatg 27415100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 2 - 106
Target Start/End: Original strand, 27566262 - 27566365
Alignment:
Q  2 gaatgctttaggatgtgaatgatttgtgttggttctaaatgcttgcagtcatgaatatatatagttaaaagaataattgagaaaccattggctacttgaa 101  Q
    ||||| ||||||||||||||||||||||||||| ||||||||||| |  ||||||||||||||| ||||||||| ||||| ||||  |||||||||||||    
T  27566262 gaatggtttaggatgtgaatgatttgtgttggtcctaaatgcttgtaaccatgaatatatatagataaaagaat-attgaaaaactgttggctacttgaa 27566360  T
Q  102 tgatt 106  Q
    |||||    
T  27566361 tgatt 27566365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 27415453 - 27415341
Alignment:
Q  1 tgaatgctttaggatgtgaatgatttgtgttggttctaaatgcttgcagtcatgaatatatatagttaaaagaat---aattgagaaaccattggctact 97  Q
    |||||||||||||||||||||| ||||||||||| ||||||||||| || | |||||||| |||| | |||||||    ||||||||||  |||||||||    
T  27415453 tgaatgctttaggatgtgaatgttttgtgttggtcctaaatgcttgtagccttgaatataaatagatgaaagaattcatattgagaaacagttggctact 27415354  T
Q  98 tgaatgattggtg 110  Q
    |||||||||||||    
T  27415353 tgaatgattggtg 27415341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 27420234 - 27420021
Alignment:
Q  1 tgaatgctttaggatgtgaatgatttgtgttggttctaaatgcttgcagtcatgaatatatatagttaaaagaa-taa--ttgagaaaccattggctact 97  Q
    |||||||||||||||||||||| ||||||||||| ||||||||||| || | ||||||||||||| |  ||||| |||  |||||||||  ||| |||||    
T  27420234 tgaatgctttaggatgtgaatgttttgtgttggtcctaaatgcttgtagccttgaatatatatagatgtaagaactaattttgagaaacagttgcctact 27420135  T
Q  98 tgaatgattggt---ggagggatatactgtagtatagga-------ttaggatggagtcatagcatctacatggagacaagagcaacatatataagatca 187  Q
    ||||||||||||   |||||| ||| || |||||||| |       ||||| | | |||| || ||||||| |||| ||||||   ||||||||||||||    
T  27420134 tgaatgattggtgaaggaggggtatcctatagtatagaattaaaatttaggttagggtcaaagaatctacaaggaggcaagag---catatataagatca 27420038  T
Q  188 catggtattgtcttaga 204  Q
    |||||| ||||||||||    
T  27420037 catggtgttgtcttaga 27420021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 239 - 338
Target Start/End: Complemental strand, 27425423 - 27425324
Alignment:
Q  239 aagagaaagtttaattgaccttgatacttaattaggaatgcaaggacctcaaagttctgtcctggtatgcaaatatcatggagttggtcttgcaaaaata 338  Q
    |||||||||||||||| |||||| |||||| |||| || ||| ||||| |||||||| || | |||||||||||||||||||||| |||| |||||||||    
T  27425423 aagagaaagtttaattaaccttgttacttatttagcaaggcagggaccgcaaagttccgttcaggtatgcaaatatcatggagtttgtctggcaaaaata 27425324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 242 - 318
Target Start/End: Complemental strand, 27419963 - 27419887
Alignment:
Q  242 agaaagtttaattgaccttgatacttaattaggaatgcaaggacctcaaagttctgtcctggtatgcaaatatcatg 318  Q
    ||||||||||||||||||||||||||||||| ||| ||| ||||| | ||||||||| |||||| ||||||||||||    
T  27419963 agaaagtttaattgaccttgatacttaattaagaaggcagggaccgcgaagttctgttctggtaagcaaatatcatg 27419887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 2 - 104
Target Start/End: Complemental strand, 27425641 - 27425540
Alignment:
Q  2 gaatgctttaggatgtgaatgatttgtgttggttctaaatgcttgcagtcatgaatatatatagttaaaagaataattgagaaaccattggctacttgaa 101  Q
    ||||| ||||||||||||||||||||||||||| ||||||||||| || | | ||||||||||| ||| ||||| || || ||||  |||||||||||||    
T  27425641 gaatggtttaggatgtgaatgatttgtgttggtcctaaatgcttgtagcctttaatatatatagataagagaat-atggaaaaactgttggctacttgaa 27425543  T
Q  102 tga 104  Q
    |||    
T  27425542 tga 27425540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 210 - 312
Target Start/End: Original strand, 27566449 - 27566551
Alignment:
Q  210 accctaccataaaacagacctattcatggaagagaaagtttaattgaccttgatacttaattaggaatgcaaggacctcaaagttctgtcctggtatgca 309  Q
    |||| |||| ||||||| |||||  ||| |||||||||||||||||||| || |||||| |||| |||||| ||||| |||||||||||  |||||||||    
T  27566449 accccaccaaaaaacaggcctatcaatgcaagagaaagtttaattgaccatgttacttatttagcaatgcagggaccgcaaagttctgttatggtatgca 27566548  T
Q  310 aat 312  Q
    |||    
T  27566549 aat 27566551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 14 - 65
Target Start/End: Original strand, 27516917 - 27516968
Alignment:
Q  14 atgtgaatgatttgtgttggttctaaatgcttgcagtcatgaatatatatag 65  Q
    ||||||||||||||||||||| |||||||||||||| |||||||||||||||    
T  27516917 atgtgaatgatttgtgttggtgctaaatgcttgcagccatgaatatatatag 27516968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 14 - 65
Target Start/End: Complemental strand, 27466646 - 27466595
Alignment:
Q  14 atgtgaatgatttgtgttggttctaaatgcttgcagtcatgaatatatatag 65  Q
    ||||||||||||||||||||| ||||| |||||||| |||||||||||||||    
T  27466646 atgtgaatgatttgtgttggtgctaaaggcttgcagccatgaatatatatag 27466595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 14 - 65
Target Start/End: Complemental strand, 27473719 - 27473668
Alignment:
Q  14 atgtgaatgatttgtgttggttctaaatgcttgcagtcatgaatatatatag 65  Q
    ||||||||||||||||||| | ||||| |||||||| |||||||||||||||    
T  27473719 atgtgaatgatttgtgttgatgctaaaggcttgcagccatgaatatatatag 27473668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 3 - 65
Target Start/End: Complemental strand, 27557329 - 27557266
Alignment:
Q  3 aatgctttaggatgtgaatgattt-gtgttggttctaaatgcttgcagtcatgaatatatatag 65  Q
    ||||||||||| |||||||||||| |||||||| |||||||||||||   ||||||||||||||    
T  27557329 aatgctttaggttgtgaatgattttgtgttggtcctaaatgcttgcaactatgaatatatatag 27557266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 51 - 110
Target Start/End: Original strand, 27563705 - 27563763
Alignment:
Q  51 catgaatatatatagttaaaagaataattgagaaaccattggctacttgaatgattggtg 110  Q
    ||||||||||||||| |||||||||| |||  |||| |||||||||||||||||||||||    
T  27563705 catgaatatatatagataaaagaata-ttgcaaaactattggctacttgaatgattggtg 27563763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 15 - 64
Target Start/End: Original strand, 27431468 - 27431518
Alignment:
Q  15 tgtgaatgat-ttgtgttggttctaaatgcttgcagtcatgaatatatata 64  Q
    |||||||||| ||||||||||| |||| |||||||| ||||||||||||||    
T  27431468 tgtgaatgatattgtgttggttataaaagcttgcagccatgaatatatata 27431518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 23 - 65
Target Start/End: Original strand, 27445116 - 27445158
Alignment:
Q  23 atttgtgttggttctaaatgcttgcagtcatgaatatatatag 65  Q
    ||||| ||||||||| ||||||||||||||| |||||||||||    
T  27445116 atttgagttggttcttaatgcttgcagtcattaatatatatag 27445158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 22 - 65
Target Start/End: Original strand, 27508119 - 27508163
Alignment:
Q  22 gatttgtgttggttctaaatgctt-gcagtcatgaatatatatag 65  Q
    ||||||||||||||| ||||| || ||||||||||||||||||||    
T  27508119 gatttgtgttggttcgaaatgtttagcagtcatgaatatatatag 27508163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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