View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18325_high_9 (Length: 482)

Name: NF18325_high_9
Description: NF18325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18325_high_9
NF18325_high_9
[»] chr2 (3 HSPs)
chr2 (1-311)||(18805802-18806112)
chr2 (356-468)||(18807093-18807205)
chr2 (394-469)||(14463055-14463130)
[»] chr4 (6 HSPs)
chr4 (4-266)||(4598411-4598673)
chr4 (1-157)||(4623033-4623192)
chr4 (4-267)||(25015643-25015906)
chr4 (4-157)||(25037033-25037186)
chr4 (334-455)||(15994089-15994210)
chr4 (19-59)||(25253867-25253907)
[»] chr8 (1 HSPs)
chr8 (335-435)||(33468171-33468271)
[»] chr7 (2 HSPs)
chr7 (334-427)||(6066693-6066786)
chr7 (331-380)||(6650403-6650452)
[»] scaffold0495 (1 HSPs)
scaffold0495 (334-413)||(7997-8075)
[»] chr6 (1 HSPs)
chr6 (334-413)||(10231274-10231352)
[»] scaffold0001 (1 HSPs)
scaffold0001 (334-413)||(67535-67614)
[»] chr5 (1 HSPs)
chr5 (10-57)||(30363044-30363091)
[»] chr3 (1 HSPs)
chr3 (333-375)||(21396331-21396373)


Alignment Details
Target: chr2 (Bit Score: 283; Significance: 1e-158; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 311
Target Start/End: Original strand, 18805802 - 18806112
Alignment:
Q  1 caaggtgtgaatgtacaaggatattttgcatggtcccttttggacaattttgaatggcaagatggatacaccttacgttttggaattaactttgttgatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  18805802 caaggtgtgaatgtacaaggatattttgcatggtcccttttcgacaattttgaatggcaagacggatacaccttacgttttggaattaactttgttgatt 18805901  T
Q  101 tcgaaaataatcttaaaagataccctaagctctctgcccgttggtttaggaagtttcatgagaaaccttagagagggagcttgatgcatgtcattgtgat 200  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||    
T  18805902 tcaaaaataatcttaaaagataccctaagctctctgcccgttggtttaggaagtttcttgagaaaccttagagagggagcttgatgtatgtcattgtgat 18806001  T
Q  201 catcaataatattatacgagcttggtcgttaatcaagagcaactttaatctttaattggttttcttaatcaacacttatctaaatattgtatggtataaa 300  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18806002 caccaataatattatacgagcttggtcgttaatcaagagcaactttaatctttaattggttttcttaatcaacacttatctaaatattgtatggtataaa 18806101  T
Q  301 ttatacggtat 311  Q
    |||||| ||||    
T  18806102 ttataccgtat 18806112  T

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Target: chr2; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 356 - 468
Target Start/End: Original strand, 18807093 - 18807205
Alignment:
Q  356 tatgtccttttcgattttgagtacatggtttggagagcgagtcctttgttatactttcggacggtaacataaatttttatgttctttcggttactgtgta 455  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||| |||||||||    
T  18807093 tatgtccttttcgattttgagtacatggtttggagagcgagtcctttgttatgctttcagacggtaacataaatttttatgttttttcggctactgtgta 18807192  T
Q  456 atagtatgtctgt 468  Q
    |||||||||||||    
T  18807193 atagtatgtctgt 18807205  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 394 - 469
Target Start/End: Original strand, 14463055 - 14463130
Alignment:
Q  394 gagtcctttgttatactttcggacggtaacataaatttttatgttctttcggttactgtgtaatagtatgtctgtg 469  Q
    |||||||||||||| |||||   | ||||||||| ||||||| ||||||||| ||||||||| ||| |||||||||    
T  14463055 gagtcctttgttatgctttcaagctgtaacataattttttattttctttcggctactgtgtagtagcatgtctgtg 14463130  T

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Target: chr4 (Bit Score: 115; Significance: 3e-58; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 4 - 266
Target Start/End: Complemental strand, 4598673 - 4598411
Alignment:
Q  4 ggtgtgaatgtacaaggatattttgcatggtcccttttggacaattttgaatggcaagatggatacaccttacgttttggaattaactttgttgatttcg 103  Q
    ||||||||||| |||||||||||||||||||||||||||||||| |||||||||   || ||||||||| | |||||||||||||||||||||||||  |    
T  4598673 ggtgtgaatgtgcaaggatattttgcatggtcccttttggacaactttgaatggagtgacggatacaccgtgcgttttggaattaactttgttgattatg 4598574  T
Q  104 aaaataatcttaaaagataccctaagctctctgcccgttggtttaggaagtttcatgagaaaccttagagagggagcttgatgcatgtcattgtgatcat 203  Q
    | ||| ||||||||||| ||||||||||||||||||||||||||||||| |||| ||| |||||| |||    |||||||||| |||| ||  ||| ||     
T  4598573 agaatgatcttaaaagacaccctaagctctctgcccgttggtttaggaaatttcttgaaaaacctcagaattagagcttgatgtatgtaatcatgaccac 4598474  T
Q  204 caataatattatacgagcttggtcgttaatcaagagcaactttaatctttaattggttttctt 266  Q
    |||||| |  ||| ||| |||||| ||||||||||| |||| |||||||  ||||||||||||    
T  4598473 caataaaacaatatgagtttggtcattaatcaagagaaactataatcttgcattggttttctt 4598411  T

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Target: chr4; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 4623192 - 4623033
Alignment:
Q  1 caaggtgtgaatgtacaaggatattttgcatggtcccttttggacaattttgaatggcaagatggatacaccttacgttttggaattaactttgttgatt 100  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| | || ||||||||  | |||||||||||||||||||||||||    
T  4623192 caaggtgtgaaggtacaaggatattttgcatggtcccttttggacaactttgaatggaatgacggatacactgtgcgttttggaattaactttgttgatt 4623093  T
Q  101 tcgaaaa---taatcttaaaagataccctaagctctctgcccgttggtttaggaagtttc 157  Q
      || ||   | |||||| |||| ||||||||||||||||||| ||||||||||||||||    
T  4623092 atgagaatggtcatcttacaagacaccctaagctctctgcccggtggtttaggaagtttc 4623033  T

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Target: chr4; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 4 - 267
Target Start/End: Complemental strand, 25015906 - 25015643
Alignment:
Q  4 ggtgtgaatgtacaaggatattttgcatggtcccttttggacaattttgaatggcaagatggatacaccttacgttttggaattaactttgttgatttcg 103  Q
    |||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||  | |||||||||   |||||||||||| |||| |||| ||| |     
T  25015906 ggtgtgaaagtacaaggatattttgcatggtcacttttggacaactttgaatggctggctggatacactagacgttttggaatgaactatgttaattaca 25015807  T
Q  104 aaaataatcttaaaagataccctaagctctctgcccgttggtttaggaagtttcatgagaaaccttagagagggagcttgatgcatgtcattgtgatcat 203  Q
    |  |||||||||||||| |||  ||||||||||||| |||||||||||| |||| | ||||||  ||| |    | ||||||| |||||||  | |||      
T  25015806 atgataatcttaaaagacaccaaaagctctctgcccattggtttaggaactttcttaagaaacactagtgttacaacttgatgtatgtcatgataatccc 25015707  T
Q  204 caataatattatacgagcttggtcgttaatcaagagcaactttaatctttaattggttttctta 267  Q
    ||||||||| ||| || ||||||| |||||||||| | |||||||| || |||| |||| ||||    
T  25015706 caataatatgatatgaacttggtcattaatcaagaactactttaattttgaattagtttcctta 25015643  T

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Target: chr4; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 4 - 157
Target Start/End: Complemental strand, 25037186 - 25037033
Alignment:
Q  4 ggtgtgaatgtacaaggatattttgcatggtcccttttggacaattttgaatggcaagatggatacaccttacgttttggaattaactttgttgatttcg 103  Q
    |||||||| ||||||||||||||||||||||| ||||| ||||| ||||||||||  |  |||||||    ||||||||||||||||||||| |||| |     
T  25037186 ggtgtgaaagtacaaggatattttgcatggtcacttttagacaactttgaatggctggccggatacagaagacgttttggaattaactttgtagattaca 25037087  T
Q  104 aaaataatcttaaaagataccctaagctctctgcccgttggtttaggaagtttc 157  Q
    || |||||||||||||| |||  ||||| ||||||| |||||||||||| ||||    
T  25037086 aagataatcttaaaagacaccaaaagctttctgcccattggtttaggaattttc 25037033  T

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Target: chr4; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 334 - 455
Target Start/End: Original strand, 15994089 - 15994210
Alignment:
Q  334 ttattggtggttaaaatcgtattatgtccttttcgattttgagtacatggtttggagagcgagtcctttgttatactttcggacggtaacataaattttt 433  Q
    |||||||||| |||||||||| |||| | ||||||||||||| |||||||||||||||  ||| | ||||||||  ||||  |  |||||||||||||||    
T  15994089 ttattggtggctaaaatcgtaatatgactttttcgattttgattacatggtttggagattgagccttttgttatgttttcaaattgtaacataaattttt 15994188  T
Q  434 atgttctttcggttactgtgta 455  Q
    || ||||||||| |||| ||||    
T  15994189 attttctttcggctactctgta 15994210  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 25253867 - 25253907
Alignment:
Q  19 ggatattttgcatggtcccttttggacaattttgaatggca 59  Q
    ||||| |||||||||||| | ||||||||||||||||||||    
T  25253867 ggatactttgcatggtccttgttggacaattttgaatggca 25253907  T

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Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 335 - 435
Target Start/End: Complemental strand, 33468271 - 33468171
Alignment:
Q  335 tattggtggttaaaatcgtattatgtccttttcgattttgagtacatggtttggagagcgagtcctttgttatactttcggacggtaacataaattttta 434  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||  |||||||||||||| ||||| | | ||||||| | ||||||    
T  33468271 tattggtggttaaaatcgtattatgcccttttcgattttgagtacatgatttagagattgagtcctttgttatgctttcaggctgtaacatgatttttta 33468172  T
Q  435 t 435  Q
    |    
T  33468171 t 33468171  T

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Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 334 - 427
Target Start/End: Complemental strand, 6066786 - 6066693
Alignment:
Q  334 ttattggtggttaaaatcgtattatgtccttttcgattttgagtacatggtttggagagcgagtcctttgttatactttcggacggtaacataa 427  Q
    |||||||||| |||||||||||||||||||||||||||| ||||||| ||||||||||  || ||||||||| | ||||| | | |||||||||    
T  6066786 ttattggtggctaaaatcgtattatgtccttttcgatttggagtacacggtttggagattgactcctttgttgtgctttcaggctgtaacataa 6066693  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 331 - 380
Target Start/End: Complemental strand, 6650452 - 6650403
Alignment:
Q  331 agtttattggtggttaaaatcgtattatgtccttttcgattttgagtaca 380  Q
    ||||||||||||||||||||| || |||||||||||| ||||||| ||||    
T  6650452 agtttattggtggttaaaatcatactatgtccttttcaattttgaataca 6650403  T

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Target: scaffold0495 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0495
Description:

Target: scaffold0495; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 334 - 413
Target Start/End: Original strand, 7997 - 8075
Alignment:
Q  334 ttattggtggttaaaatcgtattatgtccttttcgattttgagtacatggtttggagagcgagtcctttgttatactttc 413  Q
    |||||||||| ||||||||||||||| ||||| ||||||||| |||| ||||||||||  |||||||||||||| |||||    
T  7997 ttattggtggctaaaatcgtattatgcccttt-cgattttgactacacggtttggagattgagtcctttgttatgctttc 8075  T

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Target: chr6 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 334 - 413
Target Start/End: Original strand, 10231274 - 10231352
Alignment:
Q  334 ttattggtggttaaaatcgtattatgtccttttcgattttgagtacatggtttggagagcgagtcctttgttatactttc 413  Q
    |||||||||| ||||||||||||||| ||||| ||||||||| |||| ||||||||||  |||||||||||||| |||||    
T  10231274 ttattggtggctaaaatcgtattatgcccttt-cgattttgactacacggtttggagattgagtcctttgttatgctttc 10231352  T

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Target: scaffold0001 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 334 - 413
Target Start/End: Complemental strand, 67614 - 67535
Alignment:
Q  334 ttattggtggttaaaatcgtattatgtccttttcgattttgagtacatggtttggagagcgagtcctttgttatactttc 413  Q
    |||||||||| ||||||| |||||||  |||||||||||||| ||||||||||| |||   |||| |||||||| |||||    
T  67614 ttattggtggctaaaatcttattatgatcttttcgattttgaatacatggtttgaagattaagtcttttgttatgctttc 67535  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 57
Target Start/End: Original strand, 30363044 - 30363091
Alignment:
Q  10 aatgtacaaggatattttgcatggtcccttttggacaattttgaatgg 57  Q
    |||||| ||||||||||||| ||||| || ||||||||||||||||||    
T  30363044 aatgtaaaaggatattttgcgtggtcgctattggacaattttgaatgg 30363091  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 333 - 375
Target Start/End: Complemental strand, 21396373 - 21396331
Alignment:
Q  333 tttattggtggttaaaatcgtattatgtccttttcgattttga 375  Q
    |||||||||||||||||||||||||| || | |||||||||||    
T  21396373 tttattggtggttaaaatcgtattatatcttgttcgattttga 21396331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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