View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18325_low_13 (Length: 386)
Name: NF18325_low_13
Description: NF18325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18325_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 109 - 373
Target Start/End: Complemental strand, 10551920 - 10551656
Alignment:
| Q |
109 |
cctatgtcataaagaagtaatcaagtgtcacactggatccaaaccatacatgcaaaaataagagtaaatcaaaacattgaaaagaaaatcatgcagaaaa |
208 |
Q |
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| T |
10551920 |
cctatgtcataaagaagtaatcaagtgtcacactggatccaaaccatacatgcaaatataagagtaaatcaaaacattgaaaagaaaatcatgtagaaaa |
10551821 |
T |
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| Q |
209 |
tataacccaacatgaagtcacataatcatggatctattcatacataagataacagaaatcataactactgtatgagcatcccactgtcaagcataaatag |
308 |
Q |
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| T |
10551820 |
tataacccaacatgaagtcacataatcatggatctattcatacataagataacagaaatcataactactgtatgagcatcccactgtcaagcataaatag |
10551721 |
T |
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| Q |
309 |
acaaaaagataaaatgtatagatgagagatcatgtgatttgtggctgtgatgcacctcgcctttg |
373 |
Q |
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| T |
10551720 |
acaaaaagataaaatgtatagatgagagatcatgtgatttgtggctgtgatgcacctcgcctttg |
10551656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 4 - 74
Target Start/End: Complemental strand, 10552080 - 10552010
Alignment:
| Q |
4 |
ttcaaagacatggaaaactttgtatgaacattgcttctatccgctaatagaaacatcttttacgaacattg |
74 |
Q |
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| T |
10552080 |
ttcaaagacatggaaaactttgtatgaacattgcttctatccgttaatagaaacatcttttacgaacattg |
10552010 |
T |
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