View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18325_low_16 (Length: 301)
Name: NF18325_low_16
Description: NF18325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18325_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 37989553 - 37989836
Alignment:
| Q |
1 |
agaaccctactccaaataaagaaagaatttggcaaccctagccaactctcttcatgggatccaaccatcgactgctgtaacagtacatggctaggtgttg |
100 |
Q |
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| T |
37989553 |
agaaccctactccaaataaagaaagaatttggcaaccctagccaactctcttcatgggatccaaccatcgactgctgtaacagtacatggctaggtgtag |
37989652 |
T |
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| Q |
101 |
attgtgacaactacaaccgaacctaccgtatcactagtcttgatctccgcaacatcagcctccccaaacctgtcccaattccaacctccatattcaacct |
200 |
Q |
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| T |
37989653 |
attgtgacaacttcaaccgaacctaccgtatcaccggtcttgatctcgaaaacatcaacctccctaaacctgtcccaattccaccttccatattcaatct |
37989752 |
T |
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| Q |
201 |
ccctttcgtaaacttcctctatctcgcctacatgcccaaccttgttggccctatccctccttccatctccaaactctccaaact |
284 |
Q |
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| T |
37989753 |
cccttccctaaacgtcctctatctggcctacatgcccaaccttgttggccctatccctccttccatctccaaactctccaaact |
37989836 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 38013270 - 38013351
Alignment:
| Q |
1 |
agaaccctactccaaataaagaaagaatttggcaaccctagccaactctcttcatgggatccaaccatcgactgctgtaaca |
82 |
Q |
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| T |
38013270 |
agaaccctactccaaatcaaaaaagaatttggcaaccctagccaactctcttcatgggatccaaacacagactgctgcaaca |
38013351 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 8 - 64
Target Start/End: Complemental strand, 37697804 - 37697748
Alignment:
| Q |
8 |
tactccaaataaagaaagaatttggcaaccctagccaactctcttcatgggatccaa |
64 |
Q |
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| T |
37697804 |
tactccaaatcaaaaaagaatttggcaacccaaccaaactctcttcatgggatccaa |
37697748 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 207
Target Start/End: Original strand, 37993905 - 37993943
Alignment:
| Q |
169 |
cctgtcccaattccaacctccatattcaacctccctttc |
207 |
Q |
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| T |
37993905 |
cctgttccaattccaccctccatattcaacctccctttc |
37993943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 90
Target Start/End: Original strand, 37993755 - 37993832
Alignment:
| Q |
13 |
caaataaagaaagaatttggcaaccctagccaactctcttcatgggatccaaccatcgactgctgtaacagtacatgg |
90 |
Q |
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| T |
37993755 |
caaatcaaaaaacaatttggcaacccaaccaaactctcttcatgggattcaactaccgactgctgcaacggaacatgg |
37993832 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 159 - 284
Target Start/End: Original strand, 25326317 - 25326445
Alignment:
| Q |
159 |
cctccccaaacctgtcccaattccaacctccatattca---acctccctttcgtaaacttcctctatctcgcctacatgcccaaccttgttggccctatc |
255 |
Q |
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| T |
25326317 |
cctccccaaacacgttcaaattccaccctccatattcactaacctccctttcataaactttctctctatcgacaacatccccaacctcgttggcactatc |
25326416 |
T |
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| Q |
256 |
cctccttccatctccaaactctccaaact |
284 |
Q |
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| T |
25326417 |
ccgccttccatctccaaactcaccaaact |
25326445 |
T |
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