View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18325_low_2 (Length: 751)
Name: NF18325_low_2
Description: NF18325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18325_low_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 153; Significance: 1e-80; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 579 - 735
Target Start/End: Original strand, 25732341 - 25732497
Alignment:
| Q |
579 |
tcatagattaccatttgtggaacaatgtttcaagcaatttatgtagacacattatcttcaaaacattcaaagttggtaaggaaaacaacagaagaatatg |
678 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25732341 |
tcatagattaccatttgtggaacaatatttcaagcaatttatgtagacacattatcttcaaaacattcaaagttggtaaggaaaacaacagaagaatatg |
25732440 |
T |
|
| Q |
679 |
aaagtagtaaatccaagagacagaatgtattagcaatgcttttgtttaggatgaaca |
735 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25732441 |
aaagtagtaaatccaagagacagaatgtattagcaatgcttttgtttaggatgaaca |
25732497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 579 - 716
Target Start/End: Original strand, 25740015 - 25740153
Alignment:
| Q |
579 |
tcatagattaccatttgtggaacaatgtttcaagcaatttatgta-gacacattatcttcaaaacattcaaagttggtaaggaaaacaacagaagaatat |
677 |
Q |
| |
|
||||| |||||||||| |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25740015 |
tcatatattaccatttatggaacaatgtttcaagcaatttatgtaagacacattatcttcaacacattcaaagttggtaaggaaaacaacagaagaatat |
25740114 |
T |
|
| Q |
678 |
gaaagtagtaaatccaagagacagaatgtattagcaatg |
716 |
Q |
| |
|
|||||||||||||||| | ||||||||||| ||||||| |
|
|
| T |
25740115 |
gaaagtagtaaatccataaaacagaatgtatcagcaatg |
25740153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 500 - 587
Target Start/End: Complemental strand, 25739187 - 25739100
Alignment:
| Q |
500 |
tccactatctctgctatgacaacatactgtccacaaaaattcaaataattcactcttgctccatacacgaggccgtaattcatagatt |
587 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25739187 |
tccactatctcggctatgacaacatactgtccacaaaaattcaaataaatcactcttgctccatacacgaggccgtaattcatagatt |
25739100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 579 - 693
Target Start/End: Original strand, 25746165 - 25746279
Alignment:
| Q |
579 |
tcatagattaccatttgtggaacaatgtttcaagcaatttatgtagacacattatcttcaaaacattcaaagttggtaaggaaaacaacagaagaatatg |
678 |
Q |
| |
|
||||| |||||||| | |||||||||||||||||||| |||||| || ||||||| ||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
25746165 |
tcataaattaccatatatggaacaatgtttcaagcaaattatgtggagacattattttcaaaacattcaaagttggtaaggaaaacaacagaagaatgtg |
25746264 |
T |
|
| Q |
679 |
aaagtagtaaatcca |
693 |
Q |
| |
|
||| |||| |||||| |
|
|
| T |
25746265 |
aaactagttaatcca |
25746279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 627 - 720
Target Start/End: Original strand, 25754682 - 25754774
Alignment:
| Q |
627 |
acattatcttcaaaacattcaaagttggtaaggaaaacaacagaagaatatgaaagtagtaaatccaagagacagaatgtattagcaatgcttt |
720 |
Q |
| |
|
||||| |||||||||||||||||||||| | ||||||||| ||||| ||| ||| ||| ||| || ||||||||||||||||||| ||||| |
|
|
| T |
25754682 |
acattgtcttcaaaacattcaaagttggcatcgaaaacaactgaagactattaaaccagttaat-cataagacagaatgtattagcaaagcttt |
25754774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 281 - 436
Target Start/End: Original strand, 45302795 - 45302950
Alignment:
| Q |
281 |
aaaatcaaattcttctaattctcattgatttttggttttgcccatccctataaacaactttttaattaacagcatcatcataataagagagttgtcggag |
380 |
Q |
| |
|
|||||||| |||||||| |||| ||||||||||||||||| |||||| |||| |||||||| |||||| ||||||||||| || |||| | |||| |
|
|
| T |
45302795 |
aaaatcaatttcttctagttcttattgatttttggttttggccatccttatatacaactttccaattaagggcatcatcatagtaggagactaacaggag |
45302894 |
T |
|
| Q |
381 |
aaacactaaagagtcgaaagagatgaaggaggacatgttgaaagggaatggaggca |
436 |
Q |
| |
|
|| |||| || | || ||||||| || ||||||| | ||||||||||||||||| |
|
|
| T |
45302895 |
aatcactgaaaactcattagagatggagcaggacatatagaaagggaatggaggca |
45302950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University