View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18325_low_20 (Length: 247)
Name: NF18325_low_20
Description: NF18325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18325_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 18805681 - 18805543
Alignment:
| Q |
1 |
atgcaacgtaataaagatgacgataatgataatcaattctataaatatccatgagcgtctcttcgagtgatagcgttggatcatcgtactcatttaaacc |
100 |
Q |
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| T |
18805681 |
atgcaacgtaataaagatgacgataatggtaatcaattctataaatatccatgagcgtctcttcgagtgatagggttggatcatcgtactcatttaaacc |
18805582 |
T |
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| Q |
101 |
tatgatttaaatttattacaattttcaaattttagttta |
139 |
Q |
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| T |
18805581 |
tatgatttaaatttattagagttttcaaattttagttta |
18805543 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 9 - 139
Target Start/End: Original strand, 4623330 - 4623460
Alignment:
| Q |
9 |
taataaagatgacgataatgataatcaattctataaatatccatgagcgtctcttcgagtgatagcgttggatcatcgtactcatttaaacctatgattt |
108 |
Q |
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| T |
4623330 |
taatatagatgacgataaaagtaatcaattctgttagtatccatgagtgcctcttccagtgatagcgttggatcattgacttcattcatacctatgattt |
4623429 |
T |
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| Q |
109 |
aaatttattacaattttcaaattttagttta |
139 |
Q |
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| T |
4623430 |
aaatttattagaattttcaaattttagttta |
4623460 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 9 - 129
Target Start/End: Original strand, 4598827 - 4598947
Alignment:
| Q |
9 |
taataaagatgacgataatgataatcaattctataaatatccatgagcgtctcttcgagtgatagcgttggatcatcgtactcatttaaacctatgattt |
108 |
Q |
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| T |
4598827 |
taatatagatgacgataatagtagtcaattctgttagtatccatgagcgcctcttcgagtgacagcgttgaatcattgtcctcgttcatacctatgattt |
4598926 |
T |
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| Q |
109 |
aaatttattacaattttcaaa |
129 |
Q |
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| T |
4598927 |
aaatttattagaattttcaaa |
4598947 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 9 - 84
Target Start/End: Original strand, 25037330 - 25037405
Alignment:
| Q |
9 |
taataaagatgacgataatgataatcaattctataaatatccatgagcgtctcttcgagtgatagcgttggatcat |
84 |
Q |
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| T |
25037330 |
taataaagatgtcgataaaagtaatcgattctgtaagtatccatgagcgcctcttcaagtgatagcgttggatcat |
25037405 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 94
Target Start/End: Original strand, 25167581 - 25167658
Alignment:
| Q |
17 |
atgacgataatgataatcaattctataaatatccatgagcgtctcttcgagtgatagcgttggatcatcgtactcatt |
94 |
Q |
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| T |
25167581 |
atgacgataatgataatcaactctataagtatccataagagattcctcgagcgataatgatggatcatcgtactcatt |
25167658 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 84
Target Start/End: Original strand, 25016047 - 25016122
Alignment:
| Q |
9 |
taataaagatgacgataatgataatcaattctataaatatccatgagcgtctcttcgagtgatagcgttggatcat |
84 |
Q |
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||||||||||| |||||| ||||||||||| ||| ||||||| |||| ||||| |||||||| |||||||||| |
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| T |
25016047 |
taataaagatggcgataaaagtaatcaattctgtaagtatccattagcgcttcttcaagtgatagtgttggatcat |
25016122 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 209
Target Start/End: Original strand, 4598997 - 4599055
Alignment:
| Q |
152 |
atataaaatggttgttatacagactatattatcttgaattttat-ttagaagaaaataa |
209 |
Q |
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|||| ||||||||| ||||||||||||||||||||| ||| ||| ||||||| |||||| |
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| T |
4598997 |
atattaaatggttgatatacagactatattatcttgcattctatgttagaagtaaataa |
4599055 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 94
Target Start/End: Complemental strand, 25253728 - 25253651
Alignment:
| Q |
17 |
atgacgataatgataatcaattctataaatatccatgagcgtctcttcgagtgatagcgttggatcatcgtactcatt |
94 |
Q |
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|||||||||||||||||||| |||||| ||||||| || | ||||| || |||| | |||||||||||||||||| |
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| T |
25253728 |
atgacgataatgataatcaactctatatgtatccataagagattcttcaagggataaggatggatcatcgtactcatt |
25253651 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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