View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18325_low_24 (Length: 213)
Name: NF18325_low_24
Description: NF18325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18325_low_24 |
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Alignment Details
Target: chr7 (Bit Score: 149; Significance: 7e-79; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 19 - 199
Target Start/End: Original strand, 5063103 - 5063283
Alignment:
| Q |
19 |
atacatatatcctccaccctttaggaaccaaatagcctgaaaaatcatttaaaaaaggatctaattaaccctcttgatagcatcattaagatgctcacac |
118 |
Q |
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| T |
5063103 |
atacatatatcctccaccctttaggaaccaaatagcctgaaaaatcatttaaaaaaaaatctaattaaccctcttgatagcatcaataagatgctcacac |
5063202 |
T |
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| Q |
119 |
atgctattatgaatagtaagaaactatgaagtatgaaatattgacactagaaatgacacaacattatgaaaatagaataat |
199 |
Q |
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| T |
5063203 |
atgctattatgaatagtaagaacctatgaagtatgaaacattgacactaaaaatgacacaaaattatggaaatagaataat |
5063283 |
T |
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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 61
Target Start/End: Original strand, 5588552 - 5588592
Alignment:
| Q |
21 |
acatatatcctccaccctttaggaaccaaatagcctgaaaa |
61 |
Q |
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| T |
5588552 |
acatatattctccaccctttaggaatcaaatagcctgaaaa |
5588592 |
T |
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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 61
Target Start/End: Original strand, 973735 - 973775
Alignment:
| Q |
21 |
acatatatcctccaccctttaggaaccaaatagcctgaaaa |
61 |
Q |
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| T |
973735 |
acatatattctccaccctttaggaatcaaatagcctgaaaa |
973775 |
T |
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