View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18325_low_3 (Length: 722)
Name: NF18325_low_3
Description: NF18325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18325_low_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 147; Significance: 4e-77; HSPs: 13)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 147; E-Value: 4e-77
Query Start/End: Original strand, 16 - 246
Target Start/End: Complemental strand, 5159479 - 5159249
Alignment:
| Q |
16 |
tagagatataattttcaataaataaatctgtaagaactattccccnnnnnnn-tttacaaattatgtttgactatttaaaaaatttcaagnnnnnnnnga |
114 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
5159479 |
tagagatataattt-caataaataaatctgtaagaactattccccaaaaaaaatttacaaattatgtttgactatttaaaaaatttcaagttttttttga |
5159381 |
T |
|
| Q |
115 |
gtgcatatgacaaaacaagaagatgaagtctcaaattcttggagaatcctagatgacaaattggtatgggaatatgattaagatgtcatttactcattga |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |
|
|
| T |
5159380 |
gtgcatatgacaaaacaagaagatgaagtctcaaattcttggagaatcctagatgacaaattggtatgggaatatgataaagatggcatttactcattga |
5159281 |
T |
|
| Q |
215 |
agtcggcatactatcgcgtcaaagaggaaatg |
246 |
Q |
| |
|
||| |||| |||||||||||||||| ||||| |
|
|
| T |
5159280 |
agttggcaacctatcgcgtcaaagagaaaatg |
5159249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 115 - 247
Target Start/End: Complemental strand, 5181608 - 5181476
Alignment:
| Q |
115 |
gtgcatatgacaaaacaagaagatgaagtctcaaattcttggagaatcctagatgacaaattggtatgggaatatgattaagatgtcatttactcattga |
214 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |||||||||||||| |
|
|
| T |
5181608 |
gtgcatatgacaaaacaagaagatgaaatctcaaattcttggagaatcctagatgagaaattggtatgggaatatgataaagatggcatttactcattga |
5181509 |
T |
|
| Q |
215 |
agtcggcatactatcgcgtcaaagaggaaatgg |
247 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| |
|
|
| T |
5181508 |
agtcggcaacctatcgcgtcaaagaggaaatgg |
5181476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 381 - 483
Target Start/End: Complemental strand, 5172314 - 5172211
Alignment:
| Q |
381 |
ctatcttaggaaatacaaaagctcccgttcatttcaccattgggtttcaacaatag-caatatcacattggtgttcaaccttgtgaaactttaccattca |
479 |
Q |
| |
|
|||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |||||||| |||||||| |
|
|
| T |
5172314 |
ctatgttaggaaatacaaaagctccggttcatttcaccattgggtttcaacaatagccaatatcacattggtgatcaaccttatgaaacttcaccattca |
5172215 |
T |
|
| Q |
480 |
ttac |
483 |
Q |
| |
|
|||| |
|
|
| T |
5172214 |
ttac |
5172211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 651 - 705
Target Start/End: Original strand, 4843578 - 4843632
Alignment:
| Q |
651 |
acttagaattattttattgaatttaattagagattgtaaactcattaacttagag |
705 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
4843578 |
acttagaattattttattgaatttaattaaagattgtaaactcattaacttagag |
4843632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 655 - 705
Target Start/End: Complemental strand, 5194726 - 5194676
Alignment:
| Q |
655 |
agaattattttattgaatttaattagagattgtaaactcattaacttagag |
705 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5194726 |
agaattattttattgaatttaattagagattgtaaactcattaacttagag |
5194676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 653 - 705
Target Start/End: Complemental strand, 5172099 - 5172047
Alignment:
| Q |
653 |
ttagaattattttattgaatttaattagagattgtaaactcattaacttagag |
705 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
5172099 |
ttagaattattttattgaatttaattaaagattgtaaactcattaacttagag |
5172047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 196 - 247
Target Start/End: Complemental strand, 5194882 - 5194831
Alignment:
| Q |
196 |
gatgtcatttactcattgaagtcggcatactatcgcgtcaaagaggaaatgg |
247 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5194882 |
gatggcatttactcattgaagtcggcatactatcgcgtcaaagaggaaatgg |
5194831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 185 - 246
Target Start/End: Original strand, 4843278 - 4843339
Alignment:
| Q |
185 |
aatatgattaagatgtcatttactcattgaagtcggcatactatcgcgtcaaagaggaaatg |
246 |
Q |
| |
|
|||||||| |||||| |||||||||||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
4843278 |
aatatgataaagatggcatttactcattgaagtcggcaaactatcgcgtcaaagagaaaatg |
4843339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 5195109 - 5195065
Alignment:
| Q |
16 |
tagagatataattttcaataaataaatctgtaagaactattcccc |
60 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
5195109 |
tagagatataattttcaataaataaatcggtaagaactattcccc |
5195065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 181
Target Start/End: Complemental strand, 5172374 - 5172339
Alignment:
| Q |
146 |
caaattcttggagaatcctagatgacaaattggtat |
181 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| |
|
|
| T |
5172374 |
caaattcttggagaatccttgatgacaaattggtat |
5172339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 248 - 286
Target Start/End: Original strand, 4843423 - 4843461
Alignment:
| Q |
248 |
aaagagtattatgtggagagtgacaaaacatattttttc |
286 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||||||||| |
|
|
| T |
4843423 |
aaagagtattatgtggagagtggcaaaccatattttttc |
4843461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 608 - 642
Target Start/End: Original strand, 4843509 - 4843543
Alignment:
| Q |
608 |
tcgaccactactaataatcatgagaataaatacta |
642 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |
|
|
| T |
4843509 |
tcgaccactactaataatcatgagaagaaatacta |
4843543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 248 - 282
Target Start/End: Complemental strand, 5172136 - 5172102
Alignment:
| Q |
248 |
aaagagtattatgtggagagtgacaaaacatattt |
282 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| |
|
|
| T |
5172136 |
aaagagtattatgtggagagtggcaaaacatattt |
5172102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University