View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18325_low_7 (Length: 570)

Name: NF18325_low_7
Description: NF18325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18325_low_7
NF18325_low_7
[»] chr1 (3 HSPs)
chr1 (11-553)||(36397803-36398346)
chr1 (16-182)||(2943316-2943481)
chr1 (161-210)||(26555336-26555385)
[»] chr7 (4 HSPs)
chr7 (28-436)||(34869768-34870168)
chr7 (92-349)||(7410827-7411082)
chr7 (167-265)||(29280797-29280891)
chr7 (419-464)||(29281030-29281075)
[»] chr3 (2 HSPs)
chr3 (318-464)||(1762803-1762948)
chr3 (111-189)||(1762718-1762796)
[»] chr8 (2 HSPs)
chr8 (137-207)||(1386491-1386561)
chr8 (27-75)||(1386375-1386423)
[»] chr4 (1 HSPs)
chr4 (237-369)||(44072537-44072669)
[»] chr5 (1 HSPs)
chr5 (137-207)||(16125795-16125865)
[»] chr2 (1 HSPs)
chr2 (129-218)||(8387737-8387826)


Alignment Details
Target: chr1 (Bit Score: 428; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 11 - 553
Target Start/End: Original strand, 36397803 - 36398346
Alignment:
Q  11 agcagagattaatagcgtgacttctttggtagtatttggtatctcattcatcgttgattgggcatcttaacagttgttacttcggatattaggtgtcact 110  Q
    |||| |||||||||| |||||||||||||||||||||| |||||  ||||||||||||||||||||||||||||||||||||| |||||||||||||||     
T  36397803 agcaaagattaatagtgtgacttctttggtagtatttgatatcttgttcatcgttgattgggcatcttaacagttgttacttcagatattaggtgtcacg 36397902  T
Q  111 cgcaacagttttttgatatgcatgcattcaaaaagaacatccgtggttgctttc-aagttgtttggttggcctgtctttgggttatttggaaagaacgca 209  Q
    ||||||| ||||||||| ||||||||||||||||||||||||||  |||||||  |||||||||||||||||| ||||||||||||||||||||||||||    
T  36397903 cgcaacaattttttgatgtgcatgcattcaaaaagaacatccgtacttgctttttaagttgtttggttggcctctctttgggttatttggaaagaacgca 36398002  T
Q  210 actcaagaaattttaacaacaacatatcgactcatgatcaacttcttgatagtatttagattcattcgtggtggtggatgaaggcaaattgcccgagttt 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  36398003 actcaagaaattttaacaacaacatatcgactcatgatcaacttcttgatagtatttagattcattcatggtggtggatgaaggcaaattgcccgagttt 36398102  T
Q  310 ttcctttaattttcatttttggtggtcttcgatgtctctcggcatggggcgttcctcttttataattgtgactcttatttcttttatgagtcttttttgt 409  Q
    ||||||||||||||||||||||||||||| | | |||||| ||||||||||||||||||||  | |||||||||||||||||||||||||||||||||||    
T  36398103 ttcctttaattttcatttttggtggtctttgctatctctctgcatggggcgttcctcttttgcagttgtgactcttatttcttttatgagtcttttttgt 36398202  T
Q  410 ttagtgttctgactctttgtattgttcctctttaggcacatcttatgcttaattgagataggctgttttatatatcgtttttggcttattcaaaaagaaa 509  Q
    |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||  ||||||||||| ||||||||||||||||||||||||    
T  36398203 ttagtgttttgactctttgtattgttcctctttagacacatcttatgcttaattgagataggtcgttttatatattgtttttggcttattcaaaaagaaa 36398302  T
Q  510 attataacacatccataaataagctatccatcactaccaaaaaa 553  Q
    |||||||||| |||||||||||||||||||||||||||||||||    
T  36398303 attataacacgtccataaataagctatccatcactaccaaaaaa 36398346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 16 - 182
Target Start/End: Complemental strand, 2943481 - 2943316
Alignment:
Q  16 agattaatagcgtgacttctttggtagtatttggtatctcattcatcgttgattgggcatcttaacagttgttacttcggatattaggtgtcactcgcaa 115  Q
    |||||||||| | ||||||||||||||||||||||||||| ||||| |||||||||| |||||||||||||||||||||||| ||| || ||||  ||||    
T  2943481 agattaatagtgcgacttctttggtagtatttggtatctccttcattgttgattgggtatcttaacagttgttacttcggatgttatgt-tcacgtgcaa 2943383  T
Q  116 cagttttttgatatgcatgcattcaaaaagaacatccgtggttgctttcaagttgtttggttggcct 182  Q
    |||||||||||   ||||||||||||||||||||| |  | ||||||||||||||||||||||||||    
T  2943382 cagttttttgacgcgcatgcattcaaaaagaacattcacgcttgctttcaagttgtttggttggcct 2943316  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 161 - 210
Target Start/End: Complemental strand, 26555385 - 26555336
Alignment:
Q  161 tttcaagttgtttggttggcctgtctttgggttatttggaaagaacgcaa 210  Q
    ||||||||||||||||||| |||||||||||| |||| ||||||| ||||    
T  26555385 tttcaagttgtttggttggtctgtctttgggtcattttgaaagaaagcaa 26555336  T

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Target: chr7 (Bit Score: 110; Significance: 4e-55; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 28 - 436
Target Start/End: Original strand, 34869768 - 34870168
Alignment:
Q  28 tgacttctttggtagtatttggtatctcattcatcgttgattgggcatcttaacagttgttacttcggatattaggtgtcactcgcaacagttttttgat 127  Q
    |||||||||||||||| |||| |||||  ||||||| || |||| ||||| |||  ||||||||||||||||| |||||||| || |||| |||||||      
T  34869768 tgacttctttggtagtgtttgatatcttgttcatcgatggttggacatctcaacgattgttacttcggatattgggtgtcacacgaaacacttttttggc 34869867  T
Q  128 atgcatgcattcaaaaagaacatccgtggttgctttcaagttgtttggttggcctgtctttgggttatttggaaagaacgcaactcaagaaattttaaca 227  Q
      |||||| |||| ||||||||| || |  |||||||||||| ||||||||| || |||||| || |||| ||||||| |||||| ||||| ||||||||    
T  34869868 --gcatgctttcagaaagaacattcgcgcctgctttcaagttatttggttggtctatctttgagtcatttagaaagaatgcaactgaagaatttttaaca 34869965  T
Q  228 acaacatatcgactcatgatcaacttcttgatagtatttagattcattcgtggtggtggatgaaggcaaattgcccgagtttttcctttaattttcattt 327  Q
    ||||||||||||||||||||||||||||| ||| |||| |||||||||    | ||||| ||||| | |||  ||  ||||||||||| |||||| ||||    
T  34869966 acaacatatcgactcatgatcaacttcttaataatattaagattcatt----gcggtggctgaagacgaataacctaagtttttccttgaatttttattt 34870061  T
Q  328 ttggtggtcttcgatgtctctcggcatggggcgttcctcttttataattgtgactcttatttcttttatgagtcttttttgtttagtgttctgactcttt 427  Q
    |||| ||| ||||  ||||||  |||||| |  |||   ||||||| ||| ||| | | ||||||||| | ||||||||||||| || || | |||||||    
T  34870062 ttggcggttttcgccgtctctgtgcatggagtattc--tttttatagttgagacccatgtttcttttacgtgtcttttttgtttggtattttaactcttt 34870159  T
Q  428 gtattgttc 436  Q
    |||||||||    
T  34870160 gtattgttc 34870168  T

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Target: chr7; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 92 - 349
Target Start/End: Original strand, 7410827 - 7411082
Alignment:
Q  92 tcggatattaggtgtcactcgcaacagttttttgatatgcatgcattcaaaaagaacatccgtggttgctttcaagttgtttggttggcctgtctttggg 191  Q
    |||||||| ||  ||||| | |||||||||||||    |||||| ||||||||||||||  | | ||||||||||||| |||||||||| |||||||||     
T  7410827 tcggatatgagaagtcacacacaacagttttttgtcgcgcatgctttcaaaaagaacatttgagcttgctttcaagttatttggttggcatgtctttgga 7410926  T
Q  192 ttatttggaaagaacgcaactcaagaaattttaacaacaacatatcgactcatgatcaacttcttgatagtatttagattcattcgtggtggtggatgaa 291  Q
    | ||||||||||||| ||||||||||| ||||||||| |  |||| ||||| ||||||||||||| |||||||| || | ||||| ||||||||| ||||    
T  7410927 tcatttggaaagaacccaactcaagaatttttaacaata--atattgactcttgatcaacttcttcatagtattaagctccattcttggtggtggttgaa 7411024  T
Q  292 ggcaaattgcccgagtttttcctttaattttcatttttggtggtcttcgatgtctctc 349  Q
    ||  ||| ||||  ||||||||| |  ||||||||||||||||| ||||  |||||||    
T  7411025 ggagaatagccctggtttttcctctgcttttcatttttggtggttttcgcagtctctc 7411082  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 167 - 265
Target Start/End: Original strand, 29280797 - 29280891
Alignment:
Q  167 gttgtttggttggcctgtctttgggttatttggaaagaacgcaactcaagaaattttaacaacaacatatcgactcatgatcaacttcttgatagtatt 265  Q
    ||||| |||||||  ||||||||||||||| ||||    | |||||  |||| |||||||||||  |||| | ||||| ||||||||||||||||||||    
T  29280797 gttgtctggttggtttgtctttgggttattaggaa----cacaactagagaagttttaacaacacaatattgtctcataatcaacttcttgatagtatt 29280891  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 464
Target Start/End: Original strand, 29281030 - 29281075
Alignment:
Q  419 tgactctttgtattgttcctctttaggcacatcttatgcttaattg 464  Q
    |||| ||||||||||||||  ||||||||||| |||||||||||||    
T  29281030 tgacactttgtattgttcccttttaggcacatattatgcttaattg 29281075  T

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Target: chr3 (Bit Score: 59; Significance: 1e-24; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 318 - 464
Target Start/End: Original strand, 1762803 - 1762948
Alignment:
Q  318 attttcatttttggtggtcttcgatgtctctcggcatggggcgttcctcttttataattgtgactcttatttcttttatgagtcttttttgtttagtgtt 417  Q
    ||||||| ||||||||| |||||  ||||||| ||||| ||  ||| |||||  || ||||| |||||||||||||| || ||||||||||||| |||||    
T  1762803 attttcagttttggtggacttcgtcgtctctctgcatgtggtattcatctttg-tagttgtggctcttatttcttttgtgtgtcttttttgtttggtgtt 1762901  T
Q  418 ctgactctttgtattgttcctctttaggcacatcttatgcttaattg 464  Q
     ||||||||||||| |||||||||||| |||||||| || |||||||    
T  1762902 ttgactctttgtatggttcctctttagacacatcttgtgtttaattg 1762948  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 111 - 189
Target Start/End: Original strand, 1762718 - 1762796
Alignment:
Q  111 cgcaacagttttttgatatgcatgcattcaaaaagaacatccgtggttgctttcaagttgtttggttggcctgtctttg 189  Q
    |||||||| ||||||   ||||||||||||||||||||||  | | ||||||| |||||||||||||| ||| ||||||    
T  1762718 cgcaacagctttttggcgtgcatgcattcaaaaagaacatttgcgcttgctttgaagttgtttggttgacctttctttg 1762796  T

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Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 137 - 207
Target Start/End: Original strand, 1386491 - 1386561
Alignment:
Q  137 ttcaaaaagaacatccgtggttgctttcaagttgtttggttggcctgtctttgggttatttggaaagaacg 207  Q
    |||||||||||||| |  | |||||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  1386491 ttcaaaaagaacattcacgcttgctttcaagttgtttggttggcctgtctttgggtcatttgaaaagaacg 1386561  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 27 - 75
Target Start/End: Original strand, 1386375 - 1386423
Alignment:
Q  27 gtgacttctttggtagtatttggtatctcattcatcgttgattgggcat 75  Q
    |||||||||||||| |||||||| ||||| || ||| ||||||||||||    
T  1386375 gtgacttctttggtcgtatttggcatctcctttatcattgattgggcat 1386423  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 237 - 369
Target Start/End: Original strand, 44072537 - 44072669
Alignment:
Q  237 cgactcatgatcaacttcttgatagtatttagattcattcgtggtggtggatgaaggcaaattgcccgagtttttcctttaattttcatttttggtggtc 336  Q
    |||||| |||||||||||||||||||||| || ||||||  | ||||||| ||||| | |||   | ||| ||||| ||| ||||| || ||||||||||    
T  44072537 cgactcttgatcaacttcttgatagtattaagcttcattttttgtggtggttgaagacgaataagctgaggttttcttttgatttttatatttggtggtc 44072636  T
Q  337 ttcgatgtctctcggcatggggcgttcctcttt 369  Q
    |||| |||| |||  |||||||  |||||||||    
T  44072637 ttcgttgtccctctacatggggtattcctcttt 44072669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 137 - 207
Target Start/End: Complemental strand, 16125865 - 16125795
Alignment:
Q  137 ttcaaaaagaacatccgtggttgctttcaagttgtttggttggcctgtctttgggttatttggaaagaacg 207  Q
    ||||| ||||||||  ||| ||||||| | ||||||||||||||||||||||| || |||| |||||||||    
T  16125865 ttcaataagaacatttgtgcttgcttttaggttgtttggttggcctgtctttgtgtcatttcgaaagaacg 16125795  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 129 - 218
Target Start/End: Original strand, 8387737 - 8387826
Alignment:
Q  129 tgcatgcattcaaaaagaacatccgtggttgctttcaagttgtttggttggcctgtctttgggttatttggaaagaacgcaactcaagaa 218  Q
    ||||||| |||||||||||||| |||   |||| ||| ||||| |||||| ||||||||||||| | |||||||||| | || |||||||    
T  8387737 tgcatgctttcaaaaagaacattcgtctatgctctcaggttgtgtggttgtcctgtctttgggtcaattggaaagaatgtaattcaagaa 8387826  T

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