View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18325_low_9 (Length: 533)

Name: NF18325_low_9
Description: NF18325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18325_low_9
NF18325_low_9
[»] chr5 (3 HSPs)
chr5 (166-407)||(13475312-13475553)
chr5 (400-517)||(13475777-13475894)
chr5 (12-129)||(13475187-13475304)
[»] chr2 (10 HSPs)
chr2 (32-99)||(20350885-20350952)
chr2 (78-171)||(20069857-20069949)
chr2 (36-101)||(20254129-20254193)
chr2 (36-101)||(20293131-20293196)
chr2 (36-101)||(20373489-20373553)
chr2 (36-101)||(20433554-20433618)
chr2 (14-101)||(17499294-17499381)
chr2 (32-94)||(15464024-15464086)
chr2 (36-99)||(5019094-5019158)
chr2 (38-97)||(11754605-11754661)
[»] chr8 (4 HSPs)
chr8 (40-121)||(29455951-29456032)
chr8 (78-177)||(25086864-25086963)
chr8 (83-177)||(8357110-8357204)
chr8 (146-182)||(29456414-29456450)
[»] chr3 (2 HSPs)
chr3 (83-176)||(20781245-20781338)
chr3 (12-77)||(30591936-30592001)
[»] chr6 (2 HSPs)
chr6 (53-98)||(20766060-20766106)
chr6 (38-79)||(20766346-20766387)
[»] scaffold0216 (1 HSPs)
scaffold0216 (135-176)||(28354-28395)
[»] chr4 (1 HSPs)
chr4 (146-176)||(6561879-6561909)
[»] chr1 (1 HSPs)
chr1 (12-96)||(21725702-21725787)
[»] chr7 (2 HSPs)
chr7 (24-80)||(1778787-1778843)
chr7 (36-112)||(4952770-4952845)


Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-112; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 166 - 407
Target Start/End: Original strand, 13475312 - 13475553
Alignment:
Q  166 tatttgctccacgatatagatgactatttggcatgatgtttacaactgtgaacgtagcattttgaagctaatatttgtaacttttccataaacgcaagtc 265  Q
    |||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||| | | ||||||||||||    
T  13475312 tatttgctccacgatatagatgtctatttggcatgatgtttacaattgtgaacgtagtattgtgaagctaatatttgtaacttcttcgtaaacgcaagtc 13475411  T
Q  266 tactctctcgccaacgcacaaacaaacaagctaaactacaacacaactcgacattattaaggataacaagactattaagattgcaactgcaattcaaaat 365  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13475412 tactcactcgccaacgcacaaacaaacaagctaaactacaacacaactcgacattattaaggataacaagactattaagattgcaactgcaattcaaaat 13475511  T
Q  366 gtcgcactaaaccagacattgcatataatgagacagtatgat 407  Q
    |||||||||||| |||||||||||||||||||||||||||||    
T  13475512 gtcgcactaaactagacattgcatataatgagacagtatgat 13475553  T

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Target: chr5; HSP #2
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 400 - 517
Target Start/End: Original strand, 13475777 - 13475894
Alignment:
Q  400 agtatgataattaattaaaacttcactaccaaaataattttgtttaagtttattatttaccggatgataactcaattaatgtaaaagattattaccttcc 499  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13475777 agtatgataattaattaaaacttcactaccaaaataattttgtttaagtttattatttaccggatgataactcaattaatgtaaaagattattaccttcc 13475876  T
Q  500 ggtaataagtaacaatca 517  Q
    ||||||||||||||||||    
T  13475877 ggtaataagtaacaatca 13475894  T

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Target: chr5; HSP #3
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 12 - 129
Target Start/End: Original strand, 13475187 - 13475304
Alignment:
Q  12 acaaaaatttactaaattgatcctaccaataactttaaatcactaaatttcaacaaaaatcatttattttaatacaatttatttagggggacctcataaa 111  Q
    |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||    
T  13475187 acaaaaatatactaaattgatcccaccaataactttaaatcactaaatttcaacaaaaatcatttattttaatataatttatttagggagacctcataaa 13475286  T
Q  112 agtgaagagataaagggt 129  Q
    |||||| |||||||||||    
T  13475287 agtgaatagataaagggt 13475304  T

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Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 32 - 99
Target Start/End: Complemental strand, 20350952 - 20350885
Alignment:
Q  32 tcctaccaataactttaaatcactaaatttcaacaaaaatcatttattttaatacaatttatttaggg 99  Q
    ||||||||||||| ||||||||  |||||||||||||||  |||||||||||||||||||||||||||    
T  20350952 tcctaccaataacgttaaatcatgaaatttcaacaaaaaatatttattttaatacaatttatttaggg 20350885  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 78 - 171
Target Start/End: Original strand, 20069857 - 20069949
Alignment:
Q  78 ttttaatacaatttatttaggg-ggacctcataaaagtgaagagataaagggtattttcatagtcacccttctctacaagcatcatatttatttg 171  Q
    |||| ||||||||||||||||  || ||||| ||||||||||||| |  ||||| || ||||| |||||||||||||||||||||||||||||||    
T  20069857 tttttatacaatttatttaggtagggcctcaaaaaagtgaagagaga--gggtacttccatagccacccttctctacaagcatcatatttatttg 20069949  T

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Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 36 - 101
Target Start/End: Complemental strand, 20254193 - 20254129
Alignment:
Q  36 accaataactttaaatcactaaatttcaacaaaaatcatttattttaatacaatttatttaggggg 101  Q
    ||||||||| ||||||||  |||||||||||||| | |||||||||||||||||||||||||||||    
T  20254193 accaataacgttaaatcatgaaatttcaacaaaatt-atttattttaatacaatttatttaggggg 20254129  T

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Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 36 - 101
Target Start/End: Original strand, 20293131 - 20293196
Alignment:
Q  36 accaataactttaaatcactaaatttcaacaaaaatcatttattttaatacaatttatttaggggg 101  Q
    ||||||||| ||||||||  | |||||||||||||| ||||||||||||||||||||| |||||||    
T  20293131 accaataacattaaatcatgatatttcaacaaaaattatttattttaatacaatttatctaggggg 20293196  T

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Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 36 - 101
Target Start/End: Complemental strand, 20373553 - 20373489
Alignment:
Q  36 accaataactttaaatcactaaatttcaacaaaaatcatttattttaatacaatttatttaggggg 101  Q
    ||||||||| ||||||||  |||||||||||||| | |||||||||||||||||||||||||||||    
T  20373553 accaataacgttaaatcatgaaatttcaacaaaa-taatttattttaatacaatttatttaggggg 20373489  T

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Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 36 - 101
Target Start/End: Complemental strand, 20433618 - 20433554
Alignment:
Q  36 accaataactttaaatcactaaatttcaacaaaaatcatttattttaatacaatttatttaggggg 101  Q
    ||||||||| ||||||||  |||||||||||||| | |||||||||||| ||||||||||||||||    
T  20433618 accaataacgttaaatcatgaaatttcaacaaaa-taatttattttaatgcaatttatttaggggg 20433554  T

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Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 14 - 101
Target Start/End: Complemental strand, 17499381 - 17499294
Alignment:
Q  14 aaaaatttactaaattgatcctaccaataactttaaatcactaaatttcaacaaaaatcatttattttaatacaatttatttaggggg 101  Q
    ||||| ||||| ||||||||| |||| ||||  ||||||| |||||||||| |||| || ||||| ||| ||| ||||||||||||||    
T  17499381 aaaaaattactcaattgatccgaccattaacaataaatcattaaatttcaataaaagtcttttatattagtactatttatttaggggg 17499294  T

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Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 32 - 94
Target Start/End: Complemental strand, 15464086 - 15464024
Alignment:
Q  32 tcctaccaataactttaaatcactaaatttcaacaaaaatcatttattttaatacaatttatt 94  Q
    |||||| ||||| |||||||||||| |||||||||||| | |||||||||| || ||||||||    
T  15464086 tcctacaaataattttaaatcactacatttcaacaaaatttatttattttattaaaatttatt 15464024  T

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Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 36 - 99
Target Start/End: Original strand, 5019094 - 5019158
Alignment:
Q  36 accaataactttaaatcactaaatttcaacaaaa-atcatttattttaatacaatttatttaggg 99  Q
    ||||||| || ||||||| ||||||| | ||||| |||||||||||||| |||||||||||||||    
T  5019094 accaatagctctaaatcattaaatttaaccaaaaaatcatttattttaaaacaatttatttaggg 5019158  T

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Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 38 - 97
Target Start/End: Complemental strand, 11754661 - 11754605
Alignment:
Q  38 caataactttaaatcactaaatttcaacaaaaatcatttattttaatacaatttatttag 97  Q
    |||||||||||||||| |||||||||||||||||||||  ||||| |||||| |||||||    
T  11754661 caataactttaaatca-taaatttcaacaaaaatcatt--ttttagtacaatctatttag 11754605  T

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Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 40 - 121
Target Start/End: Original strand, 29455951 - 29456032
Alignment:
Q  40 ataactttaaatcactaaatttcaacaaaaatcatttattttaatacaatttatttagggggacctcataaaagtgaagaga 121  Q
    |||||| ||||||  |||||||||||||  |||||||||||||||||||||||||||||| || || | ||| |||||||||    
T  29455951 ataactctaaatcgttaaatttcaacaattatcatttattttaatacaatttatttagggtgaactaaaaaatgtgaagaga 29456032  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 78 - 177
Target Start/End: Original strand, 25086864 - 25086963
Alignment:
Q  78 ttttaatacaatttatttagggggacctcataaaagtgaagagataaagggtattttcatagtcacccttctctacaagcatcatatttatttgctccac 177  Q
    |||| ||||||||||||||||||  ||||| ||||||||| ||| | |||||  ||  |||| |||||||||||||| ||| | ||||||||||||||||    
T  25086864 tttttatacaatttatttaggggtccctcacaaaagtgaatagagatagggtgcttctatagccacccttctctacatgcaccttatttatttgctccac 25086963  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 83 - 177
Target Start/End: Original strand, 8357110 - 8357204
Alignment:
Q  83 atacaatttatttagggggacctcataaaagtgaagagataaagggtattttcatagtcacccttctctacaagcatcatatttatttgctccac 177  Q
    ||||||||||||||||||  ||| | ||||||||| ||| | |||||  ||  |||| |||||||||||||| ||| | ||||||||||||||||    
T  8357110 atacaatttatttaggggtccctgacaaaagtgaatagagatagggtgcttctatagccacccttctctacatgcaccttatttatttgctccac 8357204  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 146 - 182
Target Start/End: Original strand, 29456414 - 29456450
Alignment:
Q  146 ttctctacaagcatcatatttatttgctccacgatat 182  Q
    |||||||||| ||||||||||||||||||||| ||||    
T  29456414 ttctctacaaccatcatatttatttgctccacaatat 29456450  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 83 - 176
Target Start/End: Complemental strand, 20781338 - 20781245
Alignment:
Q  83 atacaatttatttagggggacctcataaaagtgaagagataaagggtattttcatagtcacccttctctacaagcatcatatttatttgctcca 176  Q
    ||||||||||||||||||  ||||| ||||||||| ||| | |||||  ||  |||| |||||||||||||| ||| | |||||||||||||||    
T  20781338 atacaatttatttaggggtccctcacaaaagtgaatagagatagggtgcttctatagccacccttctctacatgcaccttatttatttgctcca 20781245  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 12 - 77
Target Start/End: Original strand, 30591936 - 30592001
Alignment:
Q  12 acaaaaatttactaaattgatcctaccaataactttaaatcactaaatttcaacaaaaatcattta 77  Q
    ||||||| ||||| ||| ||| |||| ||||||| ||||||| |||||||||||||||||||||||    
T  30591936 acaaaaaattacttaatcgattctacaaataactctaaatcattaaatttcaacaaaaatcattta 30592001  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 53 - 98
Target Start/End: Complemental strand, 20766106 - 20766060
Alignment:
Q  53 actaaatttcaac-aaaaatcatttattttaatacaatttatttagg 98  Q
    ||||||||| ||| |||||||||||||||||||||||||||||||||    
T  20766106 actaaattttaacgaaaaatcatttattttaatacaatttatttagg 20766060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 79
Target Start/End: Complemental strand, 20766387 - 20766346
Alignment:
Q  38 caataactttaaatcactaaatttcaacaaaaatcatttatt 79  Q
    |||||||| ||||||| |||||||||| ||||||||||||||    
T  20766387 caataactctaaatcattaaatttcaataaaaatcatttatt 20766346  T

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Target: scaffold0216 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0216
Description:

Target: scaffold0216; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 135 - 176
Target Start/End: Original strand, 28354 - 28395
Alignment:
Q  135 catagtcacccttctctacaagcatcatatttatttgctcca 176  Q
    ||||| |||||||||||||||||||||||||||| |||||||    
T  28354 catagccacccttctctacaagcatcatatttatctgctcca 28395  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 146 - 176
Target Start/End: Complemental strand, 6561909 - 6561879
Alignment:
Q  146 ttctctacaagcatcatatttatttgctcca 176  Q
    |||||||||||||||||||||||||||||||    
T  6561909 ttctctacaagcatcatatttatttgctcca 6561879  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 96
Target Start/End: Original strand, 21725702 - 21725787
Alignment:
Q  12 acaaaaatttactaaattgatcctaccaataactttaaatcactaaatttc-aacaaaaatcatttattttaatacaatttattta 96  Q
    ||||||| ||| ||||||| ||| | | ||||| |||||| | |||||||| || |||||  ||||||||||||||||||||||||    
T  21725702 acaaaaaattattaaattgttccgatccataacgttaaattattaaatttcgaaaaaaaaatatttattttaatacaatttattta 21725787  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 24 - 80
Target Start/End: Complemental strand, 1778843 - 1778787
Alignment:
Q  24 taaattgatcctaccaataactttaaatcactaaatttcaacaaaaatcatttattt 80  Q
    |||||||||||||| ||||| |||| |||| || |||||||||||| | ||||||||    
T  1778843 taaattgatcctacaaataattttatatcattacatttcaacaaaatttatttattt 1778787  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 36 - 112
Target Start/End: Original strand, 4952770 - 4952845
Alignment:
Q  36 accaataactttaaatcactaaatttcaacaaaaatcatttattttaatacaatttatttagggggacctcataaaa 112  Q
    |||||||||| ||| ||| |||||||  |||||| | ||||||||||||| | ||||||||| ||||||||| ||||    
T  4952770 accaataactctaactcattaaattttgacaaaatt-atttattttaatatagtttatttagagggacctcaaaaaa 4952845  T

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