View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18326_high_2 (Length: 266)
Name: NF18326_high_2
Description: NF18326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18326_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 19 - 256
Target Start/End: Complemental strand, 9433290 - 9433053
Alignment:
| Q |
19 |
actactacaagctgaataagcatattcactaaaagcttgagaaagatctagaaggtcttgttcagaagttgatgattttccggatttgtgattcttggaa |
118 |
Q |
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| T |
9433290 |
actactacaagctgaataagcatattcactaaaagcttgagaaagatctagaaggtcttgttcagaagttgatgattttccggatttgtgattcttggaa |
9433191 |
T |
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| Q |
119 |
gcgagttcaccgagacggaggtcgacgacggaatcggtgagattttccgatacacaggtggatctttcggtaaaagtgcagctactgttatcttcatcga |
218 |
Q |
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| T |
9433190 |
gcgagttcaccgagacggaggtcgacgacggaatcggtgagattttccgatacacaggtggatctttcggtaaaagtgcagctactgttatcttcatcga |
9433091 |
T |
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| Q |
219 |
agatactggatcttcttgttcgcatggatcttcctatg |
256 |
Q |
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| T |
9433090 |
agatactggatcttcttgttcgcatggatcttcctatg |
9433053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 26 - 233
Target Start/End: Complemental strand, 3834278 - 3834070
Alignment:
| Q |
26 |
caagctgaataagcatattcactaaaagcttgagaaagatctagaaggtctt-gttcagaagttgatgattttccggatttgtgattcttggaagcgagt |
124 |
Q |
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| T |
3834278 |
caagctgaataagcatattcactaaaagcttgagaacgatctagaagctcttagttcaaaagttgatgattttccatatttgttattcttggaagcaagt |
3834179 |
T |
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| Q |
125 |
tcaccgagacggaggtcgacgacggaatcggtgagattttccgatacacaggtggatctttcggtaaaagtgcagctactgttatcttcatcgaagatac |
224 |
Q |
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| T |
3834178 |
tcgccgagacagaggtcgacgacggaatcgatgagacttttcgatacacaggtggatctttcggtgaaagtgcaactactgttatcttcatcgaagatac |
3834079 |
T |
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| Q |
225 |
tggatcttc |
233 |
Q |
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| T |
3834078 |
tggatcttc |
3834070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 162; Significance: 2e-86; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 23 - 256
Target Start/End: Complemental strand, 48677675 - 48677442
Alignment:
| Q |
23 |
ctacaagctgaataagcatattcactaaaagcttgagaaagatctagaaggtcttgttcagaagttgatgattttccggatttgtgattcttggaagcga |
122 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| | |||| |||||||||||||||||||||||||| |||||| |||||||||||| | |
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| T |
48677675 |
ctacaagctgaataagcatattcactaaaagcttgagaaagattttgaagctcttgttcagaagttgatgattttccatatttgttattcttggaagcaa |
48677576 |
T |
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| Q |
123 |
gttcaccgagacggaggtcgacgacggaatcggtgagattttccgatacacaggtggatctttcggtaaaagtgcagctactgttatcttcatcgaagat |
222 |
Q |
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||| |||||||||||||||| |||||||||||||||| ||| |||||||||||||||||||||||| |||||||| |||| |||||||||||||||||| |
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| T |
48677575 |
gtttgccgagacggaggtcgatgacggaatcggtgagacttttcgatacacaggtggatctttcggtgaaagtgcaactaccgttatcttcatcgaagat |
48677476 |
T |
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| Q |
223 |
actggatcttcttgttcgcatggatcttcctatg |
256 |
Q |
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||| |||||||||||| |||||||||||||||| |
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| T |
48677475 |
actaaatcttcttgttcacatggatcttcctatg |
48677442 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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