View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18326_low_1 (Length: 922)
Name: NF18326_low_1
Description: NF18326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18326_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 292; Significance: 1e-163; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 292; E-Value: 1e-163
Query Start/End: Original strand, 336 - 672
Target Start/End: Original strand, 42934157 - 42934509
Alignment:
| Q |
336 |
tatgaagccaagtttgttgttgatttgtttgtttgttacaaatcattgcttgcttcattttaatctaggtttcatgagattttttggcttacaggagtta |
435 |
Q |
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| T |
42934157 |
tatgaagccaagtttgttgttgatttgtttgtttgttacaaatcatttcttgcttcattttaatctaggtttcatgagattttttggcttacaggagtta |
42934256 |
T |
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| Q |
436 |
gaacacattataatttggggcatttcatgtatgattatgatgttatggttttagtacttgattatgtatgtttggatataacatgtgctgaatgaaatcc |
535 |
Q |
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| T |
42934257 |
gaacacattataatttggggcatttcatgtatgattatgatgttatggttttagtacttgattatgtatgtttggatataacatgtgctgaatgaaatca |
42934356 |
T |
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| Q |
536 |
actaatagaag----------------tagaaagtttttatggtggaactaattagcagatccatctcacaccttggacgaaaaagagagtattgaatga |
619 |
Q |
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| T |
42934357 |
actaatagaagttataccttttagaactagaaagtttttatggtggaactaattagcagatccatctcacaccttggacgaaaaagagagtattgaatga |
42934456 |
T |
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| Q |
620 |
cataaaatgcattaattccatgatagtactacttcttaagtttacatttaatt |
672 |
Q |
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| T |
42934457 |
cataaaatgcattaattccatgatagtactacttcttaagtttacatttaatt |
42934509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 19 - 338
Target Start/End: Original strand, 42933819 - 42934135
Alignment:
| Q |
19 |
tacaagaggatcttaattcatgggcaaacaatattaatataccgttgtctcctttaactttggagggtaacaataacgaagaagacggtgaagaagatca |
118 |
Q |
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| T |
42933819 |
tacaagaggatcttaattcatgggcaaacaatattaatataccgttgtctcctttaactttggagggtaacaataaggaagaagatggtgaagaagatca |
42933918 |
T |
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| Q |
119 |
ggaacgtgttggtgatgatcaaggaaatgatcagaaacccgtttttgacctaatcaatgaaatgaattctttggataccaacagcagaagtagtattgat |
218 |
Q |
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| T |
42933919 |
ggaacgtgttggtgatgatcaaggaaatgatcagaaacccgtttttgacctaatcaatgaaatgaattctttggataccaacagc---agtagtattgat |
42934015 |
T |
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| Q |
219 |
ccggggcaccaggtttgttatttagttggtgatctattttattttatgttttcccaatttcgttttgtaaatttgtgtttctttggttgaattaaccact |
318 |
Q |
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| T |
42934016 |
ccggggcaccaggtttgttatttagttggtgatctattttattttatgttttcccaatttcgttttgtaaatttgagtttctttggttgaattaatcaca |
42934115 |
T |
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| Q |
319 |
ttgattctatatataattat |
338 |
Q |
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| T |
42934116 |
ttgattctatatataattat |
42934135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 657 - 899
Target Start/End: Original strand, 42934524 - 42934766
Alignment:
| Q |
657 |
aagtttacatttaattgtcttttatgtcatgcaaataattgaatctaacataattactctaattgtccatatccacaaataaaaccaatcacaactctag |
756 |
Q |
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| T |
42934524 |
aagtttacatttaattgtcttttatgtcatgcaaataatggaatctaacataattactctaattgtccatatccacaaataaaaccaatcacaactctag |
42934623 |
T |
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| Q |
757 |
ttttaggattctgtacctctgctaatatcccctcaaaagcacagatttaaccaacccttcaattaaaaatgcaaatatcctaagatagattttttaccat |
856 |
Q |
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| T |
42934624 |
ttttaggattctgtacctctgctaatatcccctcaaaagcacagatttaaccaacccttcaattaaaaatgcaaatatcctaagatagattttttaccat |
42934723 |
T |
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| Q |
857 |
taattttaacattttctgatatgatattctactgaatatgcag |
899 |
Q |
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| T |
42934724 |
taattttaacattttctgatatgatattctgctgaatatgcag |
42934766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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