View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18326_low_4 (Length: 251)

Name: NF18326_low_4
Description: NF18326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18326_low_4
NF18326_low_4
[»] chr3 (16 HSPs)
chr3 (51-237)||(23697145-23697331)
chr3 (51-237)||(23715601-23715787)
chr3 (51-237)||(23734057-23734243)
chr3 (51-237)||(23753720-23753906)
chr3 (51-237)||(85889-86075)
chr3 (101-194)||(44041854-44041948)
chr3 (180-227)||(10104782-10104829)
chr3 (106-217)||(45215216-45215327)
chr3 (181-227)||(10215931-10215977)
chr3 (181-227)||(10225560-10225606)
chr3 (111-177)||(27593350-27593416)
chr3 (111-217)||(38629620-38629726)
chr3 (114-227)||(45926768-45926881)
chr3 (111-227)||(35731080-35731196)
chr3 (111-227)||(46252023-46252139)
chr3 (180-216)||(46749409-46749445)
[»] chr4 (12 HSPs)
chr4 (51-237)||(56397581-56397767)
chr4 (51-237)||(42315037-42315223)
chr4 (106-216)||(37370702-37370812)
chr4 (106-216)||(28100397-28100507)
chr4 (114-227)||(53594234-53594347)
chr4 (106-194)||(53272090-53272178)
chr4 (106-217)||(41762136-41762247)
chr4 (111-217)||(33449999-33450105)
chr4 (65-229)||(38230918-38231082)
chr4 (111-177)||(26336266-26336332)
chr4 (111-217)||(42720877-42720983)
chr4 (106-158)||(5117179-5117231)
[»] chr8 (11 HSPs)
chr8 (54-237)||(43489044-43489227)
chr8 (56-217)||(42366200-42366361)
chr8 (79-217)||(10127684-10127824)
chr8 (111-217)||(8502790-8502896)
chr8 (106-211)||(24318080-24318185)
chr8 (106-157)||(39038938-39038989)
chr8 (111-228)||(37567192-37567309)
chr8 (111-227)||(2112939-2113055)
chr8 (106-194)||(14061727-14061815)
chr8 (111-228)||(30382494-30382611)
chr8 (111-227)||(29260096-29260212)
[»] chr2 (15 HSPs)
chr2 (51-237)||(21736365-21736551)
chr2 (51-237)||(35172398-35172584)
chr2 (51-236)||(7487890-7488075)
chr2 (56-227)||(36598233-36598404)
chr2 (56-227)||(14920391-14920559)
chr2 (90-215)||(16146983-16147108)
chr2 (90-215)||(16155569-16155694)
chr2 (111-228)||(34028752-34028869)
chr2 (111-217)||(24193306-24193412)
chr2 (111-228)||(11534982-11535099)
chr2 (106-229)||(15284341-15284466)
chr2 (106-193)||(18176284-18176371)
chr2 (111-217)||(11998237-11998343)
chr2 (111-227)||(29941093-29941209)
chr2 (115-227)||(37981769-37981881)
[»] chr5 (8 HSPs)
chr5 (51-237)||(3604214-3604399)
chr5 (65-217)||(378391-378543)
chr5 (106-227)||(28594256-28594377)
chr5 (106-216)||(27786362-27786472)
chr5 (106-158)||(2276020-2276072)
chr5 (111-228)||(6828612-6828729)
chr5 (180-227)||(26795401-26795448)
chr5 (180-227)||(26806465-26806512)
[»] chr7 (14 HSPs)
chr7 (51-217)||(33474679-33474845)
chr7 (51-237)||(12253152-12253337)
chr7 (85-217)||(37042358-37042489)
chr7 (106-217)||(42678008-42678119)
chr7 (106-226)||(3634353-3634473)
chr7 (106-158)||(32630915-32630967)
chr7 (106-229)||(46037165-46037288)
chr7 (101-158)||(34115282-34115340)
chr7 (104-158)||(48399906-48399960)
chr7 (111-227)||(152006-152122)
chr7 (110-158)||(36355303-36355351)
chr7 (113-217)||(40097252-40097356)
chr7 (111-227)||(43057501-43057617)
chr7 (106-158)||(48545635-48545687)
[»] chr1 (14 HSPs)
chr1 (51-217)||(39758130-39758295)
chr1 (51-217)||(39763484-39763649)
chr1 (56-228)||(43553682-43553853)
chr1 (111-228)||(1928224-1928341)
chr1 (111-228)||(36402394-36402511)
chr1 (106-194)||(4289114-4289202)
chr1 (64-229)||(19007343-19007518)
chr1 (65-229)||(48194736-48194900)
chr1 (113-228)||(33243132-33243247)
chr1 (113-228)||(33263305-33263420)
chr1 (111-217)||(29208913-29209019)
chr1 (111-159)||(9831782-9831830)
chr1 (111-227)||(45318608-45318724)
chr1 (106-158)||(51826651-51826703)
[»] scaffold0472 (1 HSPs)
scaffold0472 (106-217)||(1700-1811)
[»] scaffold0287 (1 HSPs)
scaffold0287 (106-226)||(11612-11732)
[»] chr6 (6 HSPs)
chr6 (106-229)||(5957275-5957398)
chr6 (65-229)||(7100310-7100474)
chr6 (65-229)||(8794156-8794320)
chr6 (106-229)||(709060-709183)
chr6 (111-177)||(30878050-30878116)
chr6 (111-159)||(10643832-10643880)
[»] scaffold0016 (1 HSPs)
scaffold0016 (111-227)||(81602-81718)


Alignment Details
Target: chr3 (Bit Score: 179; Significance: 1e-96; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 51 - 237
Target Start/End: Complemental strand, 23697331 - 23697145
Alignment:
Q  51 ttggaagagtattacaaaatctaaagagtttgtttgagattgttggatgagtgtattttaactaaaaagtctcacacaatccattacacaaatgaatcca 150  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23697331 ttggaagagtgttacaaaatctaaagagtttgtttgagattgttggatgagtgtattttaactaaaaagtctcacacaatccattacacaaatgaatcca 23697232  T
Q  151 ttaaaatccgtctaattttcaataccacgagacattttataagttcttagaaatcttaattgaatacaaatggattttgatgtcttg 237  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  23697231 ttaaaatccgtctaattttcaataccacgagacattttataagttcttagaaatcttaattgaatacaaacggattttgatgtcttg 23697145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 51 - 237
Target Start/End: Complemental strand, 23715787 - 23715601
Alignment:
Q  51 ttggaagagtattacaaaatctaaagagtttgtttgagattgttggatgagtgtattttaactaaaaagtctcacacaatccattacacaaatgaatcca 150  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23715787 ttggaagagtgttacaaaatctaaagagtttgtttgagattgttggatgagtgtattttaactaaaaagtctcacacaatccattacacaaatgaatcca 23715688  T
Q  151 ttaaaatccgtctaattttcaataccacgagacattttataagttcttagaaatcttaattgaatacaaatggattttgatgtcttg 237  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||    
T  23715687 ttaaaatccgtctaattttcaataccacgagacattttataagttcttagaaatcttaattgaatgcaaacggattttgatgtcttg 23715601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 51 - 237
Target Start/End: Complemental strand, 23734243 - 23734057
Alignment:
Q  51 ttggaagagtattacaaaatctaaagagtttgtttgagattgttggatgagtgtattttaactaaaaagtctcacacaatccattacacaaatgaatcca 150  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23734243 ttggaagagtgttacaaaatctaaagagtttgtttgagattgttggatgagtgtattttaactaaaaagtctcacacaatccattacacaaatgaatcca 23734144  T
Q  151 ttaaaatccgtctaattttcaataccacgagacattttataagttcttagaaatcttaattgaatacaaatggattttgatgtcttg 237  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||    
T  23734143 ttaaaatccgtctaattttcaataccacgagacattttataagttcttagaaatcttaattgaatgcaaacggattttgatgtcttg 23734057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 51 - 237
Target Start/End: Complemental strand, 23753906 - 23753720
Alignment:
Q  51 ttggaagagtattacaaaatctaaagagtttgtttgagattgttggatgagtgtattttaactaaaaagtctcacacaatccattacacaaatgaatcca 150  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  23753906 ttggaagagtattacaaaatctaaagagtttgtgtgagattgttggatgagtgtattttaactaaaaagtctcacacaattcattacacaaatgaatcca 23753807  T
Q  151 ttaaaatccgtctaattttcaataccacgagacattttataagttcttagaaatcttaattgaatacaaatggattttgatgtcttg 237  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  23753806 ttaaaatccgtctaactttcaataccacgagacattttataagttcttagaaatcttaattgaatacaaacagattttgatgtcttg 23753720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 51 - 237
Target Start/End: Complemental strand, 86075 - 85889
Alignment:
Q  51 ttggaagagtattacaaaatctaaagagtttgtttgagattgttggatgagtgtattttaactaaaaagtctcacacaatccattacacaaatgaatcca 150  Q
    |||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  86075 ttggaagagtattacaaaatcttaagagtttgtgtgagattgttggatgagtgtattttaactaaaaagtctcacacaatccattacacaaatgaatcca 85976  T
Q  151 ttaaaatccgtctaattttcaataccacgagacattttataagttcttagaaatcttaattgaatacaaatggattttgatgtcttg 237  Q
     |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||    
T  85975 gtaaaatccgtctaattttcaataccacgagacattttataagttcttaaaaatcttaattgaataccaacggattttgatgtcttg 85889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 101 - 194
Target Start/End: Original strand, 44041854 - 44041948
Alignment:
Q  101 gtgtatttt-aactaaaaagtctcacacaatccattacacaaatgaatccattaaaatccgtctaattttcaataccacgagacattttataagt 194  Q
    ||||||||| |||||||||||||||   |||||||| |||||| ||||| |||||||||    || |||||||||||| ||||||||||||||||    
T  44041854 gtgtattttcaactaaaaagtctcatgaaatccattccacaaaagaatctattaaaatctacatacttttcaataccaagagacattttataagt 44041948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 227
Target Start/End: Original strand, 10104782 - 10104829
Alignment:
Q  180 agacattttataagttcttagaaatcttaattgaatacaaatggattt 227  Q
    |||||||||||||||| | ||||||| ||||||||||| |||||||||    
T  10104782 agacattttataagttgtgagaaatcctaattgaataccaatggattt 10104829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 106 - 217
Target Start/End: Original strand, 45215216 - 45215327
Alignment:
Q  106 ttttaactaaaaagtctcacacaatccattacacaaatgaatccattaaaatccgtctaattttcaataccacgagacattttataagttcttagaaatc 205  Q
    ||||||||||||||||||||| |||||| |  |||| |||||| |||||||||     | |||| |||||||  ||||||||||||||||  || ||| |    
T  45215216 ttttaactaaaaagtctcacaaaatccactctacaattgaatctattaaaatctcaagatttttgaataccaatagacattttataagttgctacaaaac 45215315  T
Q  206 ttaattgaatac 217  Q
    | ||||||||||    
T  45215316 tcaattgaatac 45215327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Original strand, 10215931 - 10215977
Alignment:
Q  181 gacattttataagttcttagaaatcttaattgaatacaaatggattt 227  Q
    ||||||||||||||| | ||||||| ||||||||||| |||||||||    
T  10215931 gacattttataagttgtgagaaatcctaattgaataccaatggattt 10215977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Original strand, 10225560 - 10225606
Alignment:
Q  181 gacattttataagttcttagaaatcttaattgaatacaaatggattt 227  Q
    ||||||||||||||| | ||||||| ||||||||||| |||||||||    
T  10225560 gacattttataagttgtgagaaatcctaattgaataccaatggattt 10225606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 177
Target Start/End: Complemental strand, 27593416 - 27593350
Alignment:
Q  111 actaaaaagtctcacacaatccattacacaaatgaatccattaaaatccgtctaattttcaatacca 177  Q
    |||||||||||||||| |||||||||| || |  ||||||||||||||| |  |||||| |||||||    
T  27593416 actaaaaagtctcacaaaatccattactcacaacaatccattaaaatccttacaattttgaatacca 27593350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 217
Target Start/End: Original strand, 38629620 - 38629726
Alignment:
Q  111 actaaaaagtctcacacaatccattacacaaatgaatccattaaaatccgtctaattttcaataccacgagacattttataagttcttagaaatcttaat 210  Q
    |||||| | ||||||| |||||||||| || |  ||||||||||||||||| || |||| |||||||  ||||| ||| |||||| |   |||||| |||    
T  38629620 actaaacaatctcacaaaatccattactcacaacaatccattaaaatccgtatagttttgaataccagtagacaatttttaagttatgcaaaatctcaat 38629719  T
Q  211 tgaatac 217  Q
    |||||||    
T  38629720 tgaatac 38629726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 227
Target Start/End: Original strand, 45926768 - 45926881
Alignment:
Q  114 aaaaagtctcacacaatccattacacaaatgaatccattaaaatccgtctaattttcaataccacgagacattttataagttcttagaaatcttaattga 213  Q
    ||||||||||||| ||| | || || ||| |||||||||||||||  || | |||| ||||||    || |||||||||||| | ||||||| |||||||    
T  45926768 aaaaagtctcacaaaatacgttgcataaaagaatccattaaaatctatcaatttttgaataccgaatgagattttataagttgtgagaaatcctaattga 45926867  T
Q  214 atacaaatggattt 227  Q
    |||| || ||||||    
T  45926868 ataccaacggattt 45926881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 227
Target Start/End: Complemental strand, 35731196 - 35731080
Alignment:
Q  111 actaaaaagtctcacacaatccattacacaaatgaatccattaaaatccgtctaattttcaataccacgagacattttataagttcttagaaatcttaat 210  Q
    |||||| | ||||||| |||||||||| || |  |||||||||||||||||  | |||| |||||||  ||||| ||| |||||| |   |||||| |||    
T  35731196 actaaacaatctcacaaaatccattactcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaat 35731097  T
Q  211 tgaatacaaatggattt 227  Q
    ||||||| | |||||||    
T  35731096 tgaataccactggattt 35731080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 227
Target Start/End: Original strand, 46252023 - 46252139
Alignment:
Q  111 actaaaaagtctcacacaatccattacacaaatgaatccattaaaatccgtctaattttcaataccacgagacattttataagttcttagaaatcttaat 210  Q
    |||||| | ||||||| |||||||||| || |  |||||||||||||||||  | |||| |||||||  ||||| ||| |||||| |   |||||| |||    
T  46252023 actaaacaatctcacaaaatccattactcacaacaatccattaaaatccgtaaagttttgaataccagcagacaatttttaagttatgcaaaatctcaat 46252122  T
Q  211 tgaatacaaatggattt 227  Q
    ||||||| | |||||||    
T  46252123 tgaataccactggattt 46252139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 216
Target Start/End: Complemental strand, 46749445 - 46749409
Alignment:
Q  180 agacattttataagttcttagaaatcttaattgaata 216  Q
    |||||||||||||||| | ||||||||||||||||||    
T  46749445 agacattttataagttgtgagaaatcttaattgaata 46749409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 167; Significance: 1e-89; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 51 - 237
Target Start/End: Complemental strand, 56397767 - 56397581
Alignment:
Q  51 ttggaagagtattacaaaatctaaagagtttgtttgagattgttggatgagtgtattttaactaaaaagtctcacacaatccattacacaaatgaatcca 150  Q
    |||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  56397767 ttggaagagtattacaaaatctcaagagtttgtgtgagattgttggatgagtgtattttaactaaaaagtctcacacaatccattacacaaatgaatcca 56397668  T
Q  151 ttaaaatccgtctaattttcaataccacgagacattttataagttcttagaaatcttaattgaatacaaatggattttgatgtcttg 237  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || ||||||||||||||||    
T  56397667 ttaaaatccgtctaattttcaataccacgagacatgttataagttcttagaaatcttaattgaataccaacggattttgatgtcttg 56397581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 51 - 237
Target Start/End: Complemental strand, 42315223 - 42315037
Alignment:
Q  51 ttggaagagtattacaaaatctaaagagtttgtttgagattgttggatgagtgtattttaactaaaaagtctcacacaatccattacacaaatgaatcca 150  Q
    |||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42315223 ttggaagagtattacaaaatctcaagagtttgtgtgagattgttggatgagtgtattttaactaaaaagtctcacacaatccattacacaaatgaatcca 42315124  T
Q  151 ttaaaatccgtctaattttcaataccacgagacattttataagttcttagaaatcttaattgaatacaaatggattttgatgtcttg 237  Q
    || |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || ||||||||||||||||    
T  42315123 ttgaaatccgtctaattttcaataccacgagacattttataagtttttagaaatcttaattgaataccaacggattttgatgtcttg 42315037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 106 - 216
Target Start/End: Original strand, 37370702 - 37370812
Alignment:
Q  106 ttttaactaaaaagtctcacacaatccattacacaaatgaatccattaaaatccgtctaattttcaataccacgagacattttataagttcttagaaatc 205  Q
    ||||||||| ||||||||||| |||||||| || ||| |||||||||||||||  || | |||| ||||||    ||||||||||||||| | |||||||    
T  37370702 ttttaactataaagtctcacaaaatccattccataaaagaatccattaaaatctatcaatttttgaataccgaaggacattttataagttgtgagaaatc 37370801  T
Q  206 ttaattgaata 216  Q
    |||||||||||    
T  37370802 ttaattgaata 37370812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 106 - 216
Target Start/End: Original strand, 28100397 - 28100507
Alignment:
Q  106 ttttaactaaaaagtctcacacaatccattacacaaatgaatccattaaaatccgtctaattttcaataccacgagacattttataagttcttagaaatc 205  Q
    |||||||||||||||||| || |||||||| || ||| |||||||| ||||||  |  | |||| ||||| |  |||||||||||||||| | |||||||    
T  28100397 ttttaactaaaaagtctctcaaaatccattccataaaagaatccatcaaaatctattaatttttgaatactaaaagacattttataagttgtgagaaatc 28100496  T
Q  206 ttaattgaata 216  Q
    |||||||||||    
T  28100497 ttaattgaata 28100507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 114 - 227
Target Start/End: Complemental strand, 53594347 - 53594234
Alignment:
Q  114 aaaaagtctcacacaatccattacacaaatgaatccattaaaatccgtctaattttcaataccacgagacattttataagttcttagaaatcttaattga 213  Q
    ||||||||||||| |||||||| || |||  ||||||| ||||||  || | |||| ||||||   |||||||||||||||| | ||||||| |||||||    
T  53594347 aaaaagtctcacaaaatccattccataaaaaaatccatcaaaatctatcaattttttaataccgaaagacattttataagttgtgagaaatcctaattga 53594248  T
Q  214 atacaaatggattt 227  Q
    |||| || ||||||    
T  53594247 ataccaacggattt 53594234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 106 - 194
Target Start/End: Complemental strand, 53272178 - 53272090
Alignment:
Q  106 ttttaactaaaaagtctcacacaatccattacacaaatgaatccattaaaatccgtctaattttcaataccacgagacattttataagt 194  Q
    ||||| ||||||||||||||| |||||| | || ||| ||||||||||||||  || || |||| |||||||  |||||||||||||||    
T  53272178 ttttagctaaaaagtctcacaaaatccactccataaaagaatccattaaaatatgtatacttttgaataccaatagacattttataagt 53272090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 106 - 217
Target Start/End: Complemental strand, 41762247 - 41762136
Alignment:
Q  106 ttttaactaaaaagtctcacacaatccattacacaaatgaatccattaaaatccgtctaattttcaataccacgagacattttataagttcttagaaatc 205  Q
    ||||||||||||| | ||||| |||||| | || ||| |||| ||| || |||| |  |||||| |||||||  |||||||||||||||| | |||||||    
T  41762247 ttttaactaaaaaatttcacaaaatccactccataaaagaattcatcaatatccataaaattttaaataccaaaagacattttataagttgtgagaaatc 41762148  T
Q  206 ttaattgaatac 217  Q
     |||||||||||    
T  41762147 ctaattgaatac 41762136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 111 - 217
Target Start/End: Original strand, 33449999 - 33450105
Alignment:
Q  111 actaaaaagtctcacacaatccattacacaaatgaatccattaaaatccgtctaattttcaataccacgagacattttataagttcttagaaatcttaat 210  Q
    ||||||| |||||||| |||||||||| || |  |||||||||||||||||  |||||| |||||||  ||||| ||| |||||| |   |||||| |||    
T  33449999 actaaaatgtctcacaaaatccattactcacaataatccattaaaatccgtagaattttgaataccaatagacaatttttaagttgtgcaaaatctcaat 33450098  T
Q  211 tgaatac 217  Q
    |||||||    
T  33450099 tgaatac 33450105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 229
Target Start/End: Complemental strand, 38231082 - 38230918
Alignment:
Q  65 caaaatctaaagagtttgtttgagattgttggatgagtgtattttaactaaaaagtctcacacaatccattacacaaatgaatccattaaaatccgtcta 164  Q
    |||||||| ||| |||| | ||||||||||||| |||    ||||||||||||||||||||| |||||||| ||   | |||||||| ||||||  |  |    
T  38231082 caaaatctcaagggtttctgtgagattgttggaagagatatttttaactaaaaagtctcacaaaatccattccatccaagaatccatcaaaatctataga 38230983  T
Q  165 attttcaataccacgagacattttataagttcttagaaatcttaattgaatacaaatggattttg 229  Q
     |||| |||||||   |||| || ||||||  | |||||||| |||||||||| || ||||||||    
T  38230982 cttttgaataccaatggacaattcataagtcatgagaaatctcaattgaataccaacggattttg 38230918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 177
Target Start/End: Complemental strand, 26336332 - 26336266
Alignment:
Q  111 actaaaaagtctcacacaatccattacacaaatgaatccattaaaatccgtctaattttcaatacca 177  Q
    |||||||||||||||| |||||||||| || |  ||||||||||||||| |  |||||| |||||||    
T  26336332 actaaaaagtctcacaaaatccattactcacaataatccattaaaatccttagaattttgaatacca 26336266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 217
Target Start/End: Complemental strand, 42720983 - 42720877
Alignment:
Q  111 actaaaaagtctcacacaatccattacacaaatgaatccattaaaatccgtctaattttcaataccacgagacattttataagttcttagaaatcttaat 210  Q
    |||||||||||||||| |||||||||| || |  || |||||||||||| |  |||||| |||||||  ||||| ||| |||||| |   |||||| |||    
T  42720983 actaaaaagtctcacaaaatccattactcacaacaacccattaaaatccttagaattttgaataccaatagacaatttttaagttgtgtaaaatctcaat 42720884  T
Q  211 tgaatac 217  Q
    |||||||    
T  42720883 tgaatac 42720877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 158
Target Start/End: Complemental strand, 5117231 - 5117179
Alignment:
Q  106 ttttaactaaaaagtctcacacaatccattacacaaatgaatccattaaaatc 158  Q
    ||||||||||||||||||||| ||||||||  || || ||||||||| |||||    
T  5117231 ttttaactaaaaagtctcacaaaatccattctactaaggaatccattgaaatc 5117179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 164; Significance: 9e-88; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 54 - 237
Target Start/End: Complemental strand, 43489227 - 43489044
Alignment:
Q  54 gaagagtattacaaaatctaaagagtttgtttgagattgttggatgagtgtattttaactaaaaagtctcacacaatccattacacaaatgaatccatta 153  Q
    ||||||||||||||||||| |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43489227 gaagagtattacaaaatctcaagagtttgtgtgagattgttagatgagtgtattttaactaaaaagtctcacacaatccattacacaaatgaatccatta 43489128  T
Q  154 aaatccgtctaattttcaataccacgagacattttataagttcttagaaatcttaattgaatacaaatggattttgatgtcttg 237  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||    
T  43489127 aaatccgtctaattttcaataccacgagacattttataagttcttagaaatcttaattgaataccaacggattttgatgtcttg 43489044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 56 - 217
Target Start/End: Complemental strand, 42366361 - 42366200
Alignment:
Q  56 agagtattacaaaatctaaagagtttgtttgagattgttggatgagtgtattttaactaaaaagtctcacacaatccattacacaaatgaatccattaaa 155  Q
    ||||||| ||||||||| |||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  42366361 agagtatcacaaaatctcaagagtttgtgtgagattgttagatgagtctattttaactaaaaagtctcacacaatctattccacaaatgaatccattaaa 42366262  T
Q  156 atccgtctaattttcaataccacgagacattttataagttcttagaaatcttaattgaatac 217  Q
    ||| |||||||||||||||||| |||||||||||||||||| ||||||||| || |||||||    
T  42366261 atctgtctaattttcaataccaagagacattttataagttcctagaaatctcaaatgaatac 42366200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 79 - 217
Target Start/End: Complemental strand, 10127824 - 10127684
Alignment:
Q  79 tttgtttgagattgttggatgagtgtattttaactaaaaag-tctcacacaatccattacacaaatgaatccattaaaatc-cgtctaattttcaatacc 176  Q
    ||||| |||||||||||  ||| |||||||||||||||||  |||| || |||||||||||| || |||||| || ||||| | | || |||||||||||    
T  10127824 tttgtatgagattgttgagtgaatgtattttaactaaaaaaatctctcaaaatccattacactaaagaatccttttaaatctcttgtatttttcaatacc 10127725  T
Q  177 acgagacattttataagttcttagaaatcttaattgaatac 217  Q
    |  ||||||||||||||| || | ||||||| |||||||||    
T  10127724 aatagacattttataagtcctaacaaatcttgattgaatac 10127684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 111 - 217
Target Start/End: Complemental strand, 8502896 - 8502790
Alignment:
Q  111 actaaaaagtctcacacaatccattacacaaatgaatccattaaaatccgtctaattttcaataccacgagacattttataagttcttagaaatcttaat 210  Q
    |||||||||||||| | |||||||||| || |  |||||||||||||||||  |||||| |||||||  ||||| ||| |||||| |   ||||||||||    
T  8502896 actaaaaagtctcataaaatccattactcacaacaatccattaaaatccgtagaattttaaataccaatagacaatttttaagttgtgcaaaatcttaat 8502797  T
Q  211 tgaatac 217  Q
    |||||||    
T  8502796 tgaatac 8502790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 106 - 211
Target Start/End: Complemental strand, 24318185 - 24318080
Alignment:
Q  106 ttttaactaaaaagtctcacacaatccattacacaaatgaatccattaaaatccgtctaattttcaataccacgagacattttataagttcttagaaatc 205  Q
    ||||||| ||||||||||||| |||||||| || ||| |||||||| ||||||  || | |||| ||||||   |||||||||||||||| | |||||||    
T  24318185 ttttaaccaaaaagtctcacaaaatccattccataaaagaatccatcaaaatctatcaatttttgaataccgaaagacattttataagttgtgagaaatc 24318086  T
Q  206 ttaatt 211  Q
     |||||    
T  24318085 ctaatt 24318080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 106 - 157
Target Start/End: Original strand, 39038938 - 39038989
Alignment:
Q  106 ttttaactaaaaagtctcacacaatccattacacaaatgaatccattaaaat 157  Q
    ||||||||||||||||||||| ||| ||||| ||||| ||||||||||||||    
T  39038938 ttttaactaaaaagtctcacaaaattcattatacaaaagaatccattaaaat 39038989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 111 - 228
Target Start/End: Original strand, 37567192 - 37567309
Alignment:
Q  111 actaaaaagtctcacacaatccattacacaaatgaatccattaaaatccgtctaattttcaataccacgagacattttataagttcttagaaatcttaat 210  Q
    ||||||||| |||||| |||||||||| || |  ||| |||||||||||||  |||||| |||||||  ||||| ||| |||||| |   |||||| |||    
T  37567192 actaaaaagcctcacaaaatccattactcacaacaattcattaaaatccgtacaattttgaataccaatagacaatttttaagttgtgcaaaatctcaat 37567291  T
Q  211 tgaatacaaatggatttt 228  Q
    ||||||| | ||||||||    
T  37567292 tgaatactactggatttt 37567309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 111 - 227
Target Start/End: Complemental strand, 2113055 - 2112939
Alignment:
Q  111 actaaaaagtctcacacaatccattacacaaatgaatccattaaaatccgtctaattttcaataccacgagacattttataagttcttagaaatcttaat 210  Q
    |||||| | ||||||| |||||||||| || |  |||||||||||||||||  | |||| |||||||  ||||| ||| |||||| |  ||||||| |||    
T  2113055 actaaacaatctcacaaaatccattactcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcgaaatctcaat 2112956  T
Q  211 tgaatacaaatggattt 227  Q
    ||||||| | |||||||    
T  2112955 tgaataccactggattt 2112939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 194
Target Start/End: Complemental strand, 14061815 - 14061727
Alignment:
Q  106 ttttaactaaaaagtctcacacaatccattacacaaatgaatccattaaaatccgtctaattttcaataccacgagacattttataagt 194  Q
    ||||| ||||||||||||||| |||||| |  | ||| ||||||||||||||  || || |||| |||||||  |||||||||||||||    
T  14061815 ttttagctaaaaagtctcacaaaatccactctataaaagaatccattaaaatttgtatacttttgaataccaacagacattttataagt 14061727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 111 - 228
Target Start/End: Original strand, 30382494 - 30382611
Alignment:
Q  111 actaaaaagtctcacacaatccattacacaaatgaatccattaaaatccgtctaattttcaataccacgagacattttataagttcttagaaatcttaat 210  Q
    |||||||||||||||| |||  ||||| || |  ||||||||||||||| |  |||||| |||||||  ||||| ||| |||||| |   |||||| |||    
T  30382494 actaaaaagtctcacaaaattgattactcacaacaatccattaaaatccttacaattttgaataccaatagacaatttttaagttgtgcaaaatctcaat 30382593  T
Q  211 tgaatacaaatggatttt 228  Q
    ||||||| | ||||||||    
T  30382594 tgaataccactggatttt 30382611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 227
Target Start/End: Original strand, 29260096 - 29260212
Alignment:
Q  111 actaaaaagtctcacacaatccattacacaaatgaatccattaaaatccgtctaattttcaataccacgagacattttataagttcttagaaatcttaat 210  Q
    |||||| | ||||||| |||||||||| || |  |||||||||||||||||  | |||| |||||||  ||||| ||| |||||| |   |||||| |||    
T  29260096 actaaacaatctcacaaaatccattactcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaat 29260195  T
Q  211 tgaatacaaatggattt 227  Q
    ||||||| | |||||||    
T  29260196 tgaataccactggattt 29260212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 159; Significance: 9e-85; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 51 - 237
Target Start/End: Original strand, 21736365 - 21736551
Alignment:
Q  51 ttggaagagtattacaaaatctaaagagtttgtttgagattgttggatgagtgtattttaactaaaaagtctcacacaatccattacacaaatgaatcca 150  Q
    |||||||||||||||||||||| |||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  21736365 ttggaagagtattacaaaatctgaagagtttgtgtgagattgttagatgagtttattttaactaaaaagtctcacacaatccattacacaaatgaatcca 21736464  T
Q  151 ttaaaatccgtctaattttcaataccacgagacattttataagttcttagaaatcttaattgaatacaaatggattttgatgtcttg 237  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || ||||||||||||||||    
T  21736465 ttaaaatccgtctaattttcaataccacgagacattttataaattcttagaaatcttaattgaataccaacggattttgatgtcttg 21736551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 51 - 237
Target Start/End: Original strand, 35172398 - 35172584
Alignment:
Q  51 ttggaagagtattacaaaatctaaagagtttgtttgagattgttggatgagtgtattttaactaaaaagtctcacacaatccattacacaaatgaatcca 150  Q
    |||||||||||||||||||||| |||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35172398 ttggaagagtattacaaaatctcaagagtttgtgtgagattgttggaagagtgtattttaactaaaaagtctcacacaatccattacacaaatgaatcca 35172497  T
Q  151 ttaaaatccgtctaattttcaataccacgagacattttataagttcttagaaatcttaattgaatacaaatggattttgatgtcttg 237  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| || ||||||||||||||||    
T  35172498 ttaaaatccgtctaattttcaataccacgaaacattttataagttcttataaatcttaattgaataccaacggattttgatgtcttg 35172584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 51 - 236
Target Start/End: Original strand, 7487890 - 7488075
Alignment:
Q  51 ttggaagagtattacaaaatctaaagagtttgtttgagattgttggatgagtgtattttaactaaaaagtctcacacaatccattacacaaatgaatcca 150  Q
    |||||||||||||||||||||| |||| ||||| ||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  7487890 ttggaagagtattacaaaatctcaagattttgtgtgaaattgttggatgagtttattttaactaaaaagtctcacacaatccattacacaaatgaatcca 7487989  T
Q  151 ttaaaatccgtctaattttcaataccacgagacattttataagttcttagaaatcttaattgaatacaaatggattttgatgtctt 236  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |||||||||||||    
T  7487990 ttaaaatccgtctaattttcaataccacgagacattttataagttcttagaaatcttaattgaataccaacgaattttgatgtctt 7488075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 56 - 227
Target Start/End: Original strand, 36598233 - 36598404
Alignment:
Q  56 agagtattacaaaatctaaagagtttgtttgagattgttggatgagtgtattttaactaaaaagtctcacacaatccattacacaaatgaatccattaaa 155  Q
    ||||||| ||||||| | |||||||||| |||||||||||||||||| |||||||| ||||||||||||||||||| ||| |||| |||||| |||||||    
T  36598233 agagtatcacaaaatttcaagagtttgtgtgagattgttggatgagtttattttaaataaaaagtctcacacaatctatttcacagatgaattcattaaa 36598332  T
Q  156 atccgtctaattttcaataccacgagacattttataagttcttagaaatcttaattgaatacaaatggattt 227  Q
    |||  ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| || ||||||    
T  36598333 atctctctaattttcaataccaagagacattttataagttcctagaaatcttaattgaataccaacggattt 36598404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 56 - 227
Target Start/End: Original strand, 14920391 - 14920559
Alignment:
Q  56 agagtattacaaaatctaaagagtttgtttgagattgttggatgagtgtattttaactaaaaagtctcacacaatccattacacaaatgaatccattaaa 155  Q
    ||||||| ||||||||| |||||||||| |||| |||| | || ||| |||||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  14920391 agagtatcacaaaatctcaagagtttgtgtgag-ttgtag-at-agtctattttaactaaaaagtctcacacaatctattccacaaatgaatccattaaa 14920487  T
Q  156 atccgtctaattttcaataccacgagacattttataagttcttagaaatcttaattgaatacaaatggattt 227  Q
    |||  ||||||||||||||||| |||||||||||||||||| ||||||||| |||||||||| || ||||||    
T  14920488 atctctctaattttcaataccaagagacattttataagttcctagaaatctcaattgaataccaacggattt 14920559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 90 - 215
Target Start/End: Complemental strand, 16147108 - 16146983
Alignment:
Q  90 ttgttggatgagtgtattttaactaaaaagtctcacacaatccattacacaaatgaatccattaaaatccgtctaattttcaataccacgagacatttta 189  Q
    |||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||| |||||||||||| ||||||||||| |||  ||||||||||    
T  16147108 ttgttggatgagtgtattttaattaaaaagtctcacacaatccattccataaatgaatctattaaaatccgtttaattttcaatcccaacagacatttta 16147009  T
Q  190 taagttcttagaaatcttaattgaat 215  Q
     |||||||||||||||| ||||||||    
T  16147008 aaagttcttagaaatctcaattgaat 16146983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 90 - 215
Target Start/End: Complemental strand, 16155694 - 16155569
Alignment:
Q  90 ttgttggatgagtgtattttaactaaaaagtctcacacaatccattacacaaatgaatccattaaaatccgtctaattttcaataccacgagacatttta 189  Q
    |||||||||| ||||||||||| ||||||||||||||||||| ||| || |||||||| ||||||||||| | |||| |||||||||| || ||||||||    
T  16155694 ttgttggatgcgtgtattttaattaaaaagtctcacacaatcaattccataaatgaattcattaaaatccatttaatattcaataccaagaaacatttta 16155595  T
Q  190 taagttcttagaaatcttaattgaat 215  Q
     || ||||||||||||| ||||||||    
T  16155594 aaatttcttagaaatctcaattgaat 16155569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 111 - 228
Target Start/End: Original strand, 34028752 - 34028869
Alignment:
Q  111 actaaaaagtctcacacaatccattacacaaatgaatccattaaaatccgtctaattttcaataccacgagacattttataagttcttagaaatcttaat 210  Q
    |||||||||||||||| |||||||||| |  |  ||||||||||||||| | ||||||| |||||||  ||||| ||| |||||| |   |||||| |||    
T  34028752 actaaaaagtctcacaaaatccattactcgtaacaatccattaaaatccttataattttgaataccaatagacaatttttaagttgtgcaaaatctgaat 34028851  T
Q  211 tgaatacaaatggatttt 228  Q
    ||||||| | ||||||||    
T  34028852 tgaataccactggatttt 34028869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 111 - 217
Target Start/End: Original strand, 24193306 - 24193412
Alignment:
Q  111 actaaaaagtctcacacaatccattacacaaatgaatccattaaaatccgtctaattttcaataccacgagacattttataagttcttagaaatcttaat 210  Q
    |||||||||||||||| |||||||||| || |  ||||||||||||||| |  |||||| |||||||  ||||| ||| |||||| |   |||||| |||    
T  24193306 actaaaaagtctcacaaaatccattactcacaacaatccattaaaatccttacaattttgaataccaatagacaatttttaagttgtgcaaaatctcaat 24193405  T
Q  211 tgaatac 217  Q
    |||||||    
T  24193406 tgaatac 24193412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 111 - 228
Target Start/End: Complemental strand, 11535099 - 11534982
Alignment:
Q  111 actaaaaagtctcacacaatccattacacaaatgaatccattaaaatccgtctaattttcaataccacgagacattttataagttcttagaaatcttaat 210  Q
    |||||||||||||||| |||||||||| || |  ||||||||||||||| |  |||||| |||||||  ||||| ||| |||||| |   |||||| |||    
T  11535099 actaaaaagtctcacaaaatccattactcacaacaatccattaaaatccttacaattttgaataccaatagacaatttttaagttgtgcaaaatctcaat 11535000  T
Q  211 tgaatacaaatggatttt 228  Q
    ||||| | | ||||||||    
T  11534999 tgaattccactggatttt 11534982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 229
Target Start/End: Original strand, 15284341 - 15284466
Alignment:
Q  106 ttttaactaaaaagt-ctcacacaatccattacacaaatgaatccattaaaatccgtctaatttt-caataccacgagacattttataagttcttagaaa 203  Q
    ||||||||||||||| |||||| ||||||||  ||||| |||||||||||||||  |  | ||||  |||||||  ||||| || ||||||  | |||||    
T  15284341 ttttaactaaaaagtactcacaaaatccattgtacaaaagaatccattaaaatctataaacttttgtaataccaatagacaattcataagtcatgagaaa 15284440  T
Q  204 tcttaattgaatacaaatggattttg 229  Q
    |||||||||||||| || ||||||||    
T  15284441 tcttaattgaataccaacggattttg 15284466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 106 - 193
Target Start/End: Original strand, 18176284 - 18176371
Alignment:
Q  106 ttttaactaaaaagtctcacacaatccattacacaaatgaatccattaaaatccgtctaattttcaataccacgagacattttataag 193  Q
    ||||||||||||||||||||| |||||| |  ||||  |||||||||||||||     |||||| |||||||  ||||||||||||||    
T  18176284 ttttaactaaaaagtctcacaaaatccactctacaatagaatccattaaaatctcaagaattttgaataccaatagacattttataag 18176371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 217
Target Start/End: Original strand, 11998237 - 11998343
Alignment:
Q  111 actaaaaagtctcacacaatccattacacaaatgaatccattaaaatccgtctaattttcaataccacgagacattttataagttcttagaaatcttaat 210  Q
    |||||||||||||||| |||||||||| || |  || |||||||||||| |  |||||| |||||||  ||||| ||| |||||| |   |||||| |||    
T  11998237 actaaaaagtctcacaaaatccattactcacaacaaaccattaaaatccttagaattttgaataccaatagacaatttttaagttgtgtaaaatctcaat 11998336  T
Q  211 tgaatac 217  Q
    |||||||    
T  11998337 tgaatac 11998343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 227
Target Start/End: Complemental strand, 29941209 - 29941093
Alignment:
Q  111 actaaaaagtctcacacaatccattacacaaatgaatccattaaaatccgtctaattttcaataccacgagacattttataagttcttagaaatcttaat 210  Q
    |||||| | ||||||| |||||||||| || |  |||||||||||||||||  | |||| |||||||  ||||| ||| |||||| |   |||||| |||    
T  29941209 actaaacaatctcacaaaatccattactcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaat 29941110  T
Q  211 tgaatacaaatggattt 227  Q
    ||||||| | |||||||    
T  29941109 tgaataccactggattt 29941093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 227
Target Start/End: Complemental strand, 37981881 - 37981769
Alignment:
Q  115 aaaagtctcacacaatccattacacaaatgaatccattaaaatccgtctaattttcaataccacgagacattttataagttcttagaaatcttaattgaa 214  Q
    |||||||||||| | || ||| || ||| |||||||| ||||||  || | |||| ||||||    ||||||||||||||| | ||||||| ||||||||    
T  37981881 aaaagtctcacaaattctattccataaaagaatccatcaaaatctatcaatttttgaatacctaaggacattttataagttgtgagaaatcctaattgaa 37981782  T
Q  215 tacaaatggattt 227  Q
    ||| || ||||||    
T  37981781 taccaacggattt 37981769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 151; Significance: 5e-80; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 51 - 237
Target Start/End: Original strand, 3604214 - 3604399
Alignment:
Q  51 ttggaagagtattacaaaatctaaagagtttgtttgagattgttggatgagtgtattttaactaaaaagtctcacacaatccattacacaaatgaatcca 150  Q
    |||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||    
T  3604214 ttggaagagtattacaaaatctcaagagtttgtgtgagattgttggatgagtgtattttaactaaaa-gtctcacacaatccattacgcaaatgaatcca 3604312  T
Q  151 ttaaaatccgtctaattttcaataccacgagacattttataagttcttagaaatcttaattgaatacaaatggattttgatgtcttg 237  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||    
T  3604313 ttaaaatctgtctaattttcaataccacgagacattttataagttcttaaaaatcttaattgaataccaacggattttgatgtcttg 3604399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 65 - 217
Target Start/End: Complemental strand, 378543 - 378391
Alignment:
Q  65 caaaatctaaagagtttgtttgagattgttggatgagtgtattttaactaaaaagtctcacacaatccattacacaaatgaatccattaaaatccgtcta 164  Q
    |||||||| |||||||| | |||||||||||||||||| ||||| ||||||||||| |||||||||||||| || | | |||||||||||||||  || |    
T  378543 caaaatctcaagagtttatgtgagattgttggatgagtatatttcaactaaaaagtttcacacaatccattccatagaagaatccattaaaatctatcaa 378444  T
Q  165 attttcaataccacgagacattttataagttcttagaaatcttaattgaatac 217  Q
    |||||||| | |  |||||||||||||||||||||||||||| ||||||||||    
T  378443 attttcaacatcgagagacattttataagttcttagaaatctcaattgaatac 378391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 106 - 227
Target Start/End: Original strand, 28594256 - 28594377
Alignment:
Q  106 ttttaactaaaaagtctcacacaatccattacacaaatgaatccattaaaatccgtctaattttcaataccacgagacattttataagttcttagaaatc 205  Q
    ||||||||||||||||||||| ||||||||| | ||| |||||||||||||||  || | |||| ||||||   |||||||||||||||| | |||||||    
T  28594256 ttttaactaaaaagtctcacaaaatccattatataaaagaatccattaaaatctatcaatttttgaataccgaaagacattttataagttgtgagaaatc 28594355  T
Q  206 ttaattgaatacaaatggattt 227  Q
     ||||||||||| || ||||||    
T  28594356 ctaattgaataccaacggattt 28594377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 106 - 216
Target Start/End: Complemental strand, 27786472 - 27786362
Alignment:
Q  106 ttttaactaaaaagtctcacacaatccattacacaaatgaatccattaaaatccgtctaattttcaataccacgagacattttataagttcttagaaatc 205  Q
    ||||||||||||||||||||| |||||||| || ||| |||||||||||||||  || | |||| ||||||    ||||||||||||||| | |||||||    
T  27786472 ttttaactaaaaagtctcacaaaatccattccataaaagaatccattaaaatctatcaatttttgaataccgaatgacattttataagttgtgagaaatc 27786373  T
Q  206 ttaattgaata 216  Q
     ||||||||||    
T  27786372 ataattgaata 27786362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 106 - 158
Target Start/End: Original strand, 2276020 - 2276072
Alignment:
Q  106 ttttaactaaaaagtctcacacaatccattacacaaatgaatccattaaaatc 158  Q
    ||||||||||||| ||||||| ||||||||| ||||| |||||||||||||||    
T  2276020 ttttaactaaaaaatctcacaaaatccattatacaaaagaatccattaaaatc 2276072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 111 - 228
Target Start/End: Original strand, 6828612 - 6828729
Alignment:
Q  111 actaaaaagtctcacacaatccattacacaaatgaatccattaaaatccgtctaattttcaataccacgagacattttataagttcttagaaatcttaat 210  Q
    |||||||||||||||| |||||||||| || |  ||||||||||||||| |  |||||| |||| ||  ||||| ||| |||||| |   |||||| |||    
T  6828612 actaaaaagtctcacaaaatccattactcataacaatccattaaaatccttacaattttgaatatcaatagacaatttttaagttgtgcaaaatctcaat 6828711  T
Q  211 tgaatacaaatggatttt 228  Q
    ||||||| | ||||||||    
T  6828712 tgaataccactggatttt 6828729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 227
Target Start/End: Original strand, 26795401 - 26795448
Alignment:
Q  180 agacattttataagttcttagaaatcttaattgaatacaaatggattt 227  Q
    |||||||||||||||| | ||||||| ||||||||||| |||||||||    
T  26795401 agacattttataagttgtgagaaatcctaattgaataccaatggattt 26795448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 227
Target Start/End: Original strand, 26806465 - 26806512
Alignment:
Q  180 agacattttataagttcttagaaatcttaattgaatacaaatggattt 227  Q
    |||||||||||||||| | ||||||| ||||||||||| |||||||||    
T  26806465 agacattttataagttgtgagaaatcctaattgaataccaatggattt 26806512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 147; Significance: 1e-77; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 51 - 217
Target Start/End: Complemental strand, 33474845 - 33474679
Alignment:
Q  51 ttggaagagtattacaaaatctaaagagtttgtttgagattgttggatgagtgtattttaactaaaaagtctcacacaatccattacacaaatgaatcca 150  Q
    |||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  33474845 ttggaagagtattacaaaatctcaagagtttgtgtgagattgttggatgagtgtattttaactaaaaagtctcacacaatccattacacaaatgaatcaa 33474746  T
Q  151 ttaaaatccgtctaattttcaataccacgagacattttataagttcttagaaatcttaattgaatac 217  Q
    |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||    
T  33474745 ttaaaatccgtctaattttcaataccacaagatattttataagttcttagaaatcttaattgaatac 33474679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 51 - 237
Target Start/End: Original strand, 12253152 - 12253337
Alignment:
Q  51 ttggaagagtattacaaaatctaaagagtttgtttgagattgttggatgagtgtattttaactaaaaagtctcacacaatccattacacaaatgaatcca 150  Q
    |||||||||||||| ||| ||| |||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12253152 ttggaagagtattataaa-tctcaagagtttgtgtgggattgttggatgagtgtattttaactaaaaagtctcacacaatccattacacaaatgaatcca 12253250  T
Q  151 ttaaaatccgtctaattttcaataccacgagacattttataagttcttagaaatcttaattgaatacaaatggattttgatgtcttg 237  Q
    ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||  |||||||||||||||    
T  12253251 ttaaaattcgtctaattttcaataccatgagacattttataagttcttagaaatcttaattgaataccaacagattttgatgtcttg 12253337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 85 - 217
Target Start/End: Original strand, 37042358 - 37042489
Alignment:
Q  85 tgagattgttggatgagtgtattttaactaaaaagtctcacacaatccattacacaaatgaatccattaaaatccgtctaattttcaataccacgagaca 184  Q
    |||||||||||||| | ||||||||||||||||| ||||||| |||||||| | | || |||| |||| |||||  | || |||| ||||||| |||| |    
T  37042358 tgagattgttggataaatgtattttaactaaaaa-tctcacaaaatccatttcgccaaagaattcatttaaatctatgtatttttgaataccatgagata 37042456  T
Q  185 ttttataagttcttagaaatcttaattgaatac 217  Q
     |||||||||| | |||||||||||||||||||    
T  37042457 atttataagttgtgagaaatcttaattgaatac 37042489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 106 - 217
Target Start/End: Original strand, 42678008 - 42678119
Alignment:
Q  106 ttttaactaaaaagtctcacacaatccattacacaaatgaatccattaaaatccgtctaattttcaataccacgagacattttataagttcttagaaatc 205  Q
    ||||||||||||||||||| | ||||||||  ||||| ||||||||||||||| |   | |||| |||||||  ||||||||||||||||  || |||||    
T  42678008 ttttaactaaaaagtctcataaaatccattctacaaaagaatccattaaaatctgcagatttttgaataccaatagacattttataagttggtacaaatc 42678107  T
Q  206 ttaattgaatac 217  Q
    ||||||||||||    
T  42678108 ttaattgaatac 42678119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 106 - 226
Target Start/End: Complemental strand, 3634473 - 3634353
Alignment:
Q  106 ttttaactaaaaagtctcacacaatccattacacaaatgaatccattaaaatccgtctaattttcaataccacgagacattttataagttcttagaaatc 205  Q
    |||||||||||||||||| || |||||||| || ||| |||||||| ||||||  |  | |||| |||||||  | |||||||||||||| | |||||||    
T  3634473 ttttaactaaaaagtctctcaaaatccattccataaaagaatccatcaaaatcaattaatttttgaataccaaaatacattttataagttgtgagaaatc 3634374  T
Q  206 ttaattgaatacaaatggatt 226  Q
    |||||||||||| || |||||    
T  3634373 ttaattgaataccaacggatt 3634353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 158
Target Start/End: Complemental strand, 32630967 - 32630915
Alignment:
Q  106 ttttaactaaaaagtctcacacaatccattacacaaatgaatccattaaaatc 158  Q
    ||||||||||||||||||||| ||||||||| |  || |||||||||||||||    
T  32630967 ttttaactaaaaagtctcacaaaatccattatatcaaggaatccattaaaatc 32630915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 106 - 229
Target Start/End: Original strand, 46037165 - 46037288
Alignment:
Q  106 ttttaactaaaaagtctcacacaatccattacacaaatgaatccattaaaatccgtctaattttcaataccacgagacattttataagttcttagaaatc 205  Q
    ||||||||||||||||||||| |||||||| ||   | |||||||| ||||||  |  | |||| |||||||  ||||| || ||||||  | |||||||    
T  46037165 ttttaactaaaaagtctcacaaaatccattccatccaagaatccatcaaaatctatagacttttgaataccaatagacaattcataagtcatgagaaatc 46037264  T
Q  206 ttaattgaatacaaatggattttg 229  Q
    | |||||||||| || ||||||||    
T  46037265 tcaattgaataccaacggattttg 46037288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 158
Target Start/End: Original strand, 34115282 - 34115340
Alignment:
Q  101 gtgtatttt-aactaaaaagtctcacacaatccattacacaaatgaatccattaaaatc 158  Q
    ||||||||| || |||||||||||||| |||||| || ||||| |||||||||||||||    
T  34115282 gtgtattttcaattaaaaagtctcacaaaatccactatacaaaagaatccattaaaatc 34115340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 158
Target Start/End: Complemental strand, 48399960 - 48399906
Alignment:
Q  104 tattttaactaaaaagtctcacacaatccattacacaaatgaatccattaaaatc 158  Q
    ||||||||||| ||||||||||| ||||||||  | ||| |||||||||||||||    
T  48399960 tattttaactagaaagtctcacaaaatccattctagaaaagaatccattaaaatc 48399906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 227
Target Start/End: Complemental strand, 152122 - 152006
Alignment:
Q  111 actaaaaagtctcacacaatccattacacaaatgaatccattaaaatccgtctaattttcaataccacgagacattttataagttcttagaaatcttaat 210  Q
    |||||| | ||||||| |||||||||| || |  |||||||||||||||||  | |||| |||||||  ||||| ||| |||||| |   |||||| |||    
T  152122 actaaacaatctcacaaaatccattactcacaacaatccattaaaatccgtagagttttgaataccattagacaatttttaagttatgcaaaatctcaat 152023  T
Q  211 tgaatacaaatggattt 227  Q
    ||||||| | |||||||    
T  152022 tgaataccactggattt 152006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 158
Target Start/End: Original strand, 36355303 - 36355351
Alignment:
Q  110 aactaaaaagtctcacacaatccattacacaaatgaatccattaaaatc 158  Q
    ||||||||||||||||| ||||||||| |  || |||||||||||||||    
T  36355303 aactaaaaagtctcacaaaatccattatatcaaggaatccattaaaatc 36355351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 217
Target Start/End: Complemental strand, 40097356 - 40097252
Alignment:
Q  113 taaaaagtctcacacaatccattacacaaatgaatccattaaaatccgtctaattttcaataccacgagacattttataagttcttagaaatcttaattg 212  Q
    |||||||||||||| |||||||||  || |  ||||||||||||||| |  |||||| |||||||  ||||| ||| |||||| |   |||||| |||||    
T  40097356 taaaaagtctcacaaaatccattagtcataacaatccattaaaatccttagaattttgaataccaatagacaatttttaagttgtgcaaaatctgaattg 40097257  T
Q  213 aatac 217  Q
    |||||    
T  40097256 aatac 40097252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 227
Target Start/End: Original strand, 43057501 - 43057617
Alignment:
Q  111 actaaaaagtctcacacaatccattacacaaatgaatccattaaaatccgtctaattttcaataccacgagacattttataagttcttagaaatcttaat 210  Q
    |||||| | ||||||| |||||||||| || |  |||||||||||||||||  | |||| |||||||  ||||| ||| |||||| |   |||||| |||    
T  43057501 actaaacaatctcacaaaatccattactcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaat 43057600  T
Q  211 tgaatacaaatggattt 227  Q
    ||||||| | |||||||    
T  43057601 tgaataccactggattt 43057617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 158
Target Start/End: Original strand, 48545635 - 48545687
Alignment:
Q  106 ttttaactaaaaagtctcacacaatccattacacaaatgaatccattaaaatc 158  Q
    ||||||||||||||||||||| |||||||| ||  || ||||||||| |||||    
T  48545635 ttttaactaaaaagtctcacaaaatccatttcaataaggaatccattgaaatc 48545687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 111; Significance: 4e-56; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 51 - 217
Target Start/End: Complemental strand, 39758295 - 39758130
Alignment:
Q  51 ttggaagagtattacaaaatctaaagagtttgtttgagattgttggatgagtgtattttaactaaaaagtctcacacaatccattacacaaatgaatcca 150  Q
    |||||||||||| ||| ||||| |||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| | ||||||||||||    
T  39758295 ttggaagagtatcacacaatctcaagagtttgtgtgagattgttggatgagtgtatttcaactaaaaagtctcacacaatccattccccaaatgaatcca 39758196  T
Q  151 ttaaaatccgtctaattttcaataccacgagacattttataagttcttagaaatcttaattgaatac 217  Q
    |||||||| | |  |||||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  39758195 ttaaaatctg-catattttcaataccaaaagacattttataagttcttagaaatcttaattgaatac 39758130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 51 - 217
Target Start/End: Complemental strand, 39763649 - 39763484
Alignment:
Q  51 ttggaagagtattacaaaatctaaagagtttgtttgagattgttggatgagtgtattttaactaaaaagtctcacacaatccattacacaaatgaatcca 150  Q
    |||||||||||| ||| ||||| |||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| | ||||||||||||    
T  39763649 ttggaagagtatcacacaatctcaagagtttgtgtgagattgttggatgagtgtatttcaactaaaaagtctcacacaatccattccccaaatgaatcca 39763550  T
Q  151 ttaaaatccgtctaattttcaataccacgagacattttataagttcttagaaatcttaattgaatac 217  Q
    |||||||| | |  |||||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  39763549 ttaaaatctg-catattttcaataccaaaagacattttataagttcttagaaatcttaattgaatac 39763484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 56 - 228
Target Start/End: Complemental strand, 43553853 - 43553682
Alignment:
Q  56 agagtattacaaaatctaaagagtttgtttgagattgttggatgagtgtattttaactaaaaagtctcacacaatccattacacaaatgaatccattaaa 155  Q
    |||||||  |||||||| |||  |||||  ||||||||||||||| ||||||||||||||||| | ||| | |||||||| ||| || ||||  ||||||    
T  43553853 agagtatgtcaaaatctcaaggttttgtgagagattgttggatgaatgtattttaactaaaaa-tttcaaaaaatccatttcaccaaagaatttattaaa 43553755  T
Q  156 atccgtctaattttcaataccacgagacattttataagttcttagaaatcttaattgaatacaaatggatttt 228  Q
    ||   | || |||| ||||||| |||||| |||||||||| | |||||||| |||||||| | || |||||||    
T  43553754 atttatgtattttttaataccaagagacaatttataagttgtgagaaatctcaattgaatgctaacggatttt 43553682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 111 - 228
Target Start/End: Original strand, 1928224 - 1928341
Alignment:
Q  111 actaaaaagtctcacacaatccattacacaaatgaatccattaaaatccgtctaattttcaataccacgagacattttataagttcttagaaatcttaat 210  Q
    |||||||||||||||| |||||||||| || |  ||||||||||||||| |  |||||| |||||||  ||||| ||| |||||| |   |||||| |||    
T  1928224 actaaaaagtctcacaaaatccattactcataacaatccattaaaatccttagaattttgaataccaatagacaatttttaagttgtgcaaaatctgaat 1928323  T
Q  211 tgaatacaaatggatttt 228  Q
    ||||||| | ||||||||    
T  1928324 tgaataccactggatttt 1928341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 111 - 228
Target Start/End: Complemental strand, 36402511 - 36402394
Alignment:
Q  111 actaaaaagtctcacacaatccattacacaaatgaatccattaaaatccgtctaattttcaataccacgagacattttataagttcttagaaatcttaat 210  Q
    |||||||||||||||| |||||||||| || |  ||||||||||||||| |  |||||| |||||||  ||||| ||| |||||| |   |||||| |||    
T  36402511 actaaaaagtctcacaaaatccattactcacaacaatccattaaaatccttacaattttgaataccaatagacaatttttaagttgtgcaaaatctcaat 36402412  T
Q  211 tgaatacaaatggatttt 228  Q
    ||||||| | ||||||||    
T  36402411 tgaataccactggatttt 36402394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 194
Target Start/End: Complemental strand, 4289202 - 4289114
Alignment:
Q  106 ttttaactaaaaagtctcacacaatccattacacaaatgaatccattaaaatccgtctaattttcaataccacgagacattttataagt 194  Q
    ||||| ||||||| ||||||| |||||| | || ||| ||||||||||||||| || || |||| |||||||  | |||||||||||||    
T  4289202 ttttagctaaaaattctcacaaaatccactccataaaagaatccattaaaatctgtatacttttgaataccagcaaacattttataagt 4289114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 229
Target Start/End: Original strand, 19007343 - 19007518
Alignment:
Q  64 acaaaatctaaagagtttgtttgagattgttggatgagtgtatt----------ttaactaaaaagtctcacacaatccattacacaaatgaatccatta 153  Q
    ||||||||| ||| |||||| ||||||||||||||||| |||||          ||||||||||||||||||| |||||||| ||   | |||||||| |    
T  19007343 acaaaatctcaagggtttgtgtgagattgttggatgagagtattatttatatttttaactaaaaagtctcacaaaatccattccatccaagaatccatca 19007442  T
Q  154 aaatccgtctaattttcaataccacgagacattttataagttcttagaaatcttaattgaatacaaatggattttg 229  Q
    |||||  |  | |||| |||||||  ||||| || ||||||  | |||||||| |||||||||| || ||||||||    
T  19007443 aaatctatagactttttaataccaatagacaattcataagtcatgagaaatctcaattgaataccaacggattttg 19007518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 229
Target Start/End: Complemental strand, 48194900 - 48194736
Alignment:
Q  65 caaaatctaaagagtttgtttgagattgttggatgagtgtattttaactaaaaagtctcacacaatccattacacaaatgaatccattaaaatccgtcta 164  Q
    |||||||| ||| |||| | ||||||||||||| |||    ||||||||||||||||||||| |||||||| ||   | |||||||| ||||||  |  |    
T  48194900 caaaatctcaagggtttctgtgagattgttggaagagatatttttaactaaaaagtctcacaaaatccattccatccaagaatccatcaaaatctataga 48194801  T
Q  165 attttcaataccacgagacattttataagttcttagaaatcttaattgaatacaaatggattttg 229  Q
     |||| |||||||   |||| || ||||||  | |||||||| |||||||||| || ||||||||    
T  48194800 cttttgaataccaatggacaattcataagtcatgagaaatctcaattgaataccaacggattttg 48194736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 113 - 228
Target Start/End: Original strand, 33243132 - 33243247
Alignment:
Q  113 taaaaagtctcacacaatccattacacaaatgaatccattaaaatccgtctaattttcaataccacgagacattttataagttcttagaaatcttaattg 212  Q
    |||||||| ||||| |||||||||| || |  ||||||||||||||| |  |||||| |||||||  ||||| ||| |||||| |   |||||| |||||    
T  33243132 taaaaagtttcacaaaatccattactcacaacaatccattaaaatccttacaattttgaataccaatagacaatttttaagttgtacaaaatctcaattg 33243231  T
Q  213 aatacaaatggatttt 228  Q
    ||||| | ||||||||    
T  33243232 aataccactggatttt 33243247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 113 - 228
Target Start/End: Original strand, 33263305 - 33263420
Alignment:
Q  113 taaaaagtctcacacaatccattacacaaatgaatccattaaaatccgtctaattttcaataccacgagacattttataagttcttagaaatcttaattg 212  Q
    |||||||| ||||| |||||||||| || |  ||||||||||||||| |  |||||| |||||||  ||||| ||| |||||| |   |||||| |||||    
T  33263305 taaaaagtttcacaaaatccattactcacaacaatccattaaaatccttacaattttgaataccaatagacaatttttaagttgtacaaaatctcaattg 33263404  T
Q  213 aatacaaatggatttt 228  Q
    ||||| | ||||||||    
T  33263405 aataccactggatttt 33263420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 217
Target Start/End: Complemental strand, 29209019 - 29208913
Alignment:
Q  111 actaaaaagtctcacacaatccattacacaaatgaatccattaaaatccgtctaattttcaataccacgagacattttataagttcttagaaatcttaat 210  Q
    |||||||||||||||| |||||||||| || |  ||||||||||||||| |  || ||| |||||||  ||||| ||| |||||| |   |||||| |||    
T  29209019 actaaaaagtctcacaaaatccattactcacaacaatccattaaaatccttagaactttgaataccaatagacaatttttaagttgtgtaaaatctcaat 29208920  T
Q  211 tgaatac 217  Q
    |||||||    
T  29208919 tgaatac 29208913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 159
Target Start/End: Complemental strand, 9831830 - 9831782
Alignment:
Q  111 actaaaaagtctcacacaatccattacacaaatgaatccattaaaatcc 159  Q
    |||||||||||||||| |||||||||| || |  |||||||||||||||    
T  9831830 actaaaaagtctcacaaaatccattactcacaacaatccattaaaatcc 9831782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 227
Target Start/End: Complemental strand, 45318724 - 45318608
Alignment:
Q  111 actaaaaagtctcacacaatccattacacaaatgaatccattaaaatccgtctaattttcaataccacgagacattttataagttcttagaaatcttaat 210  Q
    |||||| | ||||||| |||||||||| || |  |||||||||||||||||  | |||| |||||||  ||||| ||| |||||| |   |||||| |||    
T  45318724 actaaacaatctcacaaaatccattactcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaat 45318625  T
Q  211 tgaatacaaatggattt 227  Q
    ||||||| | |||||||    
T  45318624 tgaataccactggattt 45318608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 158
Target Start/End: Original strand, 51826651 - 51826703
Alignment:
Q  106 ttttaactaaaaagtctcacacaatccattacacaaatgaatccattaaaatc 158  Q
    ||||||||||||||||||||| |||||| |  ||||  |||||||||||||||    
T  51826651 ttttaactaaaaagtctcacaaaatccactctacaatagaatccattaaaatc 51826703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0472 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 106 - 217
Target Start/End: Original strand, 1700 - 1811
Alignment:
Q  106 ttttaactaaaaagtctcacacaatccattacacaaatgaatccattaaaatccgtctaattttcaataccacgagacattttataagttcttagaaatc 205  Q
    ||||||||||||||||||||| ||||||||  ||||| ||||||||||||||| |   | |||| |||||||  ||||||||||||||||  || |||||    
T  1700 ttttaactaaaaagtctcacaaaatccattctacaaaagaatccattaaaatctgcagatttttgaataccaatagacattttataagttggtacaaatc 1799  T
Q  206 ttaattgaatac 217  Q
    ||||||||||||    
T  1800 ttaattgaatac 1811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0287 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0287
Description:

Target: scaffold0287; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 106 - 226
Target Start/End: Original strand, 11612 - 11732
Alignment:
Q  106 ttttaactaaaaagtctcacacaatccattacacaaatgaatccattaaaatccgtctaattttcaataccacgagacattttataagttcttagaaatc 205  Q
    |||||||||||||||||| || |||||||| || ||| |||||||| ||||||  |  | |||| |||||||  | |||||||||||||| | |||||||    
T  11612 ttttaactaaaaagtctctcaaaatccattccataaaagaatccatcaaaatcaattaatttttgaataccaaaatacattttataagttgtgagaaatc 11711  T
Q  206 ttaattgaatacaaatggatt 226  Q
    |||||||||||| || |||||    
T  11712 ttaattgaataccaacggatt 11732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 106 - 229
Target Start/End: Complemental strand, 5957398 - 5957275
Alignment:
Q  106 ttttaactaaaaagtctcacacaatccattacacaaatgaatccattaaaatccgtctaattttcaataccacgagacattttataagttcttagaaatc 205  Q
    ||||||||||||||||||||| ||||||||| || ||  |||  |||||||||  |  | |||| |||||||  ||||| || ||||||  | |||||||    
T  5957398 ttttaactaaaaagtctcacaaaatccattatacgaaaaaatatattaaaatctatagacttttgaataccaatagacaattcataagtcatgagaaatc 5957299  T
Q  206 ttaattgaatacaaatggattttg 229  Q
    |||||||||||| || ||||||||    
T  5957298 ttaattgaataccaacggattttg 5957275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 229
Target Start/End: Complemental strand, 7100474 - 7100310
Alignment:
Q  65 caaaatctaaagagtttgtttgagattgttggatgagtgtattttaactaaaaagtctcacacaatccattacacaaatgaatccattaaaatccgtcta 164  Q
    |||||||| ||| |||| | ||||||||||||| |||    ||||||||||||||||||||| |||||||| ||   | |||||||| ||||||  |  |    
T  7100474 caaaatctcaagggtttctgtgagattgttggaagagatatttttaactaaaaagtctcacaaaatccattccatccaagaatccatcaaaatctataga 7100375  T
Q  165 attttcaataccacgagacattttataagttcttagaaatcttaattgaatacaaatggattttg 229  Q
     |||| |||||||   |||| || ||||||  | |||||||| |||||||||| || ||||||||    
T  7100374 cttttgaataccaatggacaattcataagtcatgagaaatctcaattgaataccaacggattttg 7100310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 229
Target Start/End: Original strand, 8794156 - 8794320
Alignment:
Q  65 caaaatctaaagagtttgtttgagattgttggatgagtgtattttaactaaaaagtctcacacaatccattacacaaatgaatccattaaaatccgtcta 164  Q
    |||||||| ||| |||| | ||||||||||||| |||    ||||||||||||||||||||| |||||||| ||   | |||||||| ||||||  |  |    
T  8794156 caaaatctcaagggtttctgtgagattgttggaagagatatttttaactaaaaagtctcacaaaatccattccatccaagaatccatcaaaatctataga 8794255  T
Q  165 attttcaataccacgagacattttataagttcttagaaatcttaattgaatacaaatggattttg 229  Q
     |||| |||||||   |||| || ||||||  | |||||||| |||||||||| || ||||||||    
T  8794256 cttttgaataccaatggacaattcataagtcatgagaaatctcaattgaataccaacggattttg 8794320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 106 - 229
Target Start/End: Complemental strand, 709183 - 709060
Alignment:
Q  106 ttttaactaaaaagtctcacacaatccattacacaaatgaatccattaaaatccgtctaattttcaataccacgagacattttataagttcttagaaatc 205  Q
    ||||||||||||||||||||| |||||||||||   | |||||||| ||||||  |  | |||| |||||||  ||||| || ||||||  | ||||||     
T  709183 ttttaactaaaaagtctcacaaaatccattacatccaagaatccatcaaaatctatagacttttgaataccaatagacaattcataagtcatgagaaatt 709084  T
Q  206 ttaattgaatacaaatggattttg 229  Q
    | |||||||||| || ||||||||    
T  709083 tcaattgaataccaacggattttg 709060  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 177
Target Start/End: Complemental strand, 30878116 - 30878050
Alignment:
Q  111 actaaaaagtctcacacaatccattacacaaatgaatccattaaaatccgtctaattttcaatacca 177  Q
    |||||||||||||||| |||||||||| || |  ||||||||||||||| |  |||||| |||||||    
T  30878116 actaaaaagtctcacaaaatccattactcataacaatccattaaaatccttagaattttgaatacca 30878050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 159
Target Start/End: Original strand, 10643832 - 10643880
Alignment:
Q  111 actaaaaagtctcacacaatccattacacaaatgaatccattaaaatcc 159  Q
    |||||||||||||||| |||||||||| || |  |||||||||||||||    
T  10643832 actaaaaagtctcacaaaatccattactcacaacaatccattaaaatcc 10643880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 111 - 227
Target Start/End: Original strand, 81602 - 81718
Alignment:
Q  111 actaaaaagtctcacacaatccattacacaaatgaatccattaaaatccgtctaattttcaataccacgagacattttataagttcttagaaatcttaat 210  Q
    |||||| | ||||||| |||||||||| || |  |||||||||||||||||  | |||| ||||||| |||||| ||| |||||| |   |||||| |||    
T  81602 actaaacaatctcacaaaatccattactcacaacaatccattaaaatccgtagagttttgaataccaggagacaatttttaagttatgcaaaatctcaat 81701  T
Q  211 tgaatacaaatggattt 227  Q
    ||||||| | |||||||    
T  81702 tgaataccactggattt 81718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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